| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227886
Identifier: 21227886
GI number: 21227886
Start: 2131138
End: 2132700
Strand: Direct
Name: 21227886
Synonym: MM_1784
Alternate gene names: NA
Gene position: 2131138-2132700 (Clockwise)
Preceding gene: 21227884
Following gene: 21227887
Centisome position: 52.03
GC content: 45.23
Gene sequence:
>1563_bases ATGAAAAACGTACAGAGAATCCCAGGGGATACGCCTGTTCAGGTTGGAAATTCAATGGGTGAGATGTATGGGACCGAACT TTTAGAAATTCCTTCTGATCCTGTTGCAGCCGCGGTAATGGCTCCTGTGGCTTCTACAAGAAATCAGACACTTATTTACG GTGCTGGAGGGAGTGAGTATGTGGACATGGACTCCCTCATTGAAGAGTCCTTGTCTCTCCTTGGAAACAGTCCTGTCATT ATAGTTGTTTCGGCAGAAGAACCTGCTTATGCCCTGCCTGCAGCATATACTGCAGCATATTTCAAAGCTCCTGTAGTTCC TGTTGAAGAAAGGTCTATTCCTCAGGATTTGCAGAACTCACTCGAAAACGGAGAAGAAAAGCTTATTCTTGTGGCTGCAC CAGAAAGGCTACTTTCAGACCAGTTTCTTGAAGAACTGGATGCTCTCGCAGAGATAAACCGCGTCGCAGACGAGAATCTA TACAAACATTCTCTTCTGTGGGCTAGAAGCAGATGGGGTAATTTTGGATGGGGTATGGATGAGAATTTTCATTTTGATGC ATACTACAATTTCGTACTGGCAAATCCAGAAACTCCGGAATTTGCCGCAGCAGGTTTGCCTATGGCTTACGAAGGCAACT ACGGTCCTTTGATTTATACTGAGAGTGAAGACCTGAATGATTATGTTGACCAGTATTTCTGGAGGCTTTCTCCTGATTAT TTCTCCTTCCCTTCAGACGGGCCTTTTATGAACGTAAGGATTGTAGGAGATTCTGAAAGTATAAGTTACAACGCCCAGGC AAGGGCTGACCTTGCGCTGGAAGTCCGTTCTTTCAAAAATCAGGTCGCTGGAGCAAGCGGGATTTCCTTATTTGGCTGGT CCTGGTTTTTTATCGGGTTCTTCGGAGCCATATGGGCTCTTTTTATCATGCCGAAACGCCTGCCTTACAGCTCTTTTTAT TCGCGTATTTACTGGCCCATGGCAATCCTGGTATTCGGACCTGTAGGGATACTGGCATTCCTTATGGCATATCACGAGAG TTCTGTGATGTCCATGGATCATATGGTAAAATTCATGCGCCCTCTCTGGGCGAAAGCTTTGTCGGCTACAATTATGAGCG CAGGAATAGGAATGGCTCTTATGATTGCTTCCATGTACCTTTTCCAGTTTTTTGGCTTGCCTCTTTTACGGACTTTTGAA TTTACCTCGGTATACTGGCTGGGTTCTCCAATGACTACCATAATGTGGCTTATAATGGTAATTCCTGCTATTATTGCCTC TTCTTTATTTTACATGGGTCCCATGATGGCTGATATGCGTGAAATGAAGTACTGGGAAGGGGTAAAAAAGGCTTTACCAG TAGTTTCTCTTTCCATGGTCAGTGCCTCCATAGGAATGTTTGCGACTGCATGGTATGTTATGAACTGGAGGGGATGGATG AGCGGGGAAGACCTCTGGCTCTGGGTAACTCCTTTATGGATTTCTGCAGCTGCAGGTTTCTTTGCTGCCCTGATTCCCAA TTACTTTATGGTTAAAGCCGGATGGAAGGAGGGAGAGATGTGA
Upstream 100 bases:
>100_bases CCTCACTGCTGCAATAATCCTCAGTGCTACGGGATATATCTGGTTTCTCTCAGCTGCTTATGGAAACGGATCTGATCAGG AATCCCGCATAGGATACACT
Downstream 100 bases:
>100_bases TAAAGCCTCTGTATACTCTTCTTGCAGTTGCTGTCCTTACGGTTATTTTGATCTCGGGTTATGTATTGCTGTGGGAACCC CAGGGAAAACCTCTTGATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 520; Mature: 520
Protein sequence:
>520_residues MKNVQRIPGDTPVQVGNSMGEMYGTELLEIPSDPVAAAVMAPVASTRNQTLIYGAGGSEYVDMDSLIEESLSLLGNSPVI IVVSAEEPAYALPAAYTAAYFKAPVVPVEERSIPQDLQNSLENGEEKLILVAAPERLLSDQFLEELDALAEINRVADENL YKHSLLWARSRWGNFGWGMDENFHFDAYYNFVLANPETPEFAAAGLPMAYEGNYGPLIYTESEDLNDYVDQYFWRLSPDY FSFPSDGPFMNVRIVGDSESISYNAQARADLALEVRSFKNQVAGASGISLFGWSWFFIGFFGAIWALFIMPKRLPYSSFY SRIYWPMAILVFGPVGILAFLMAYHESSVMSMDHMVKFMRPLWAKALSATIMSAGIGMALMIASMYLFQFFGLPLLRTFE FTSVYWLGSPMTTIMWLIMVIPAIIASSLFYMGPMMADMREMKYWEGVKKALPVVSLSMVSASIGMFATAWYVMNWRGWM SGEDLWLWVTPLWISAAAGFFAALIPNYFMVKAGWKEGEM
Sequences:
>Translated_520_residues MKNVQRIPGDTPVQVGNSMGEMYGTELLEIPSDPVAAAVMAPVASTRNQTLIYGAGGSEYVDMDSLIEESLSLLGNSPVI IVVSAEEPAYALPAAYTAAYFKAPVVPVEERSIPQDLQNSLENGEEKLILVAAPERLLSDQFLEELDALAEINRVADENL YKHSLLWARSRWGNFGWGMDENFHFDAYYNFVLANPETPEFAAAGLPMAYEGNYGPLIYTESEDLNDYVDQYFWRLSPDY FSFPSDGPFMNVRIVGDSESISYNAQARADLALEVRSFKNQVAGASGISLFGWSWFFIGFFGAIWALFIMPKRLPYSSFY SRIYWPMAILVFGPVGILAFLMAYHESSVMSMDHMVKFMRPLWAKALSATIMSAGIGMALMIASMYLFQFFGLPLLRTFE FTSVYWLGSPMTTIMWLIMVIPAIIASSLFYMGPMMADMREMKYWEGVKKALPVVSLSMVSASIGMFATAWYVMNWRGWM SGEDLWLWVTPLWISAAAGFFAALIPNYFMVKAGWKEGEM >Mature_520_residues MKNVQRIPGDTPVQVGNSMGEMYGTELLEIPSDPVAAAVMAPVASTRNQTLIYGAGGSEYVDMDSLIEESLSLLGNSPVI IVVSAEEPAYALPAAYTAAYFKAPVVPVEERSIPQDLQNSLENGEEKLILVAAPERLLSDQFLEELDALAEINRVADENL YKHSLLWARSRWGNFGWGMDENFHFDAYYNFVLANPETPEFAAAGLPMAYEGNYGPLIYTESEDLNDYVDQYFWRLSPDY FSFPSDGPFMNVRIVGDSESISYNAQARADLALEVRSFKNQVAGASGISLFGWSWFFIGFFGAIWALFIMPKRLPYSSFY SRIYWPMAILVFGPVGILAFLMAYHESSVMSMDHMVKFMRPLWAKALSATIMSAGIGMALMIASMYLFQFFGLPLLRTFE FTSVYWLGSPMTTIMWLIMVIPAIIASSLFYMGPMMADMREMKYWEGVKKALPVVSLSMVSASIGMFATAWYVMNWRGWM SGEDLWLWVTPLWISAAAGFFAALIPNYFMVKAGWKEGEM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58322; Mature: 58322
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.3 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.3 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNVQRIPGDTPVQVGNSMGEMYGTELLEIPSDPVAAAVMAPVASTRNQTLIYGAGGSEY CCCCCCCCCCCCHHHCHHHHHHHCCHHEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC VDMDSLIEESLSLLGNSPVIIVVSAEEPAYALPAAYTAAYFKAPVVPVEERSIPQDLQNS CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHCCCCHHHHHH LENGEEKLILVAAPERLLSDQFLEELDALAEINRVADENLYKHSLLWARSRWGNFGWGMD HCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ENFHFDAYYNFVLANPETPEFAAAGLPMAYEGNYGPLIYTESEDLNDYVDQYFWRLSPDY CCEEEEEEEEEEEECCCCCCHHHCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCC FSFPSDGPFMNVRIVGDSESISYNAQARADLALEVRSFKNQVAGASGISLFGWSWFFIGF CCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH FGAIWALFIMPKRLPYSSFYSRIYWPMAILVFGPVGILAFLMAYHESSVMSMDHMVKFMR HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLWAKALSATIMSAGIGMALMIASMYLFQFFGLPLLRTFEFTSVYWLGSPMTTIMWLIMV HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCHHHHHHHHHH IPAIIASSLFYMGPMMADMREMKYWEGVKKALPVVSLSMVSASIGMFATAWYVMNWRGWM HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCC SGEDLWLWVTPLWISAAAGFFAALIPNYFMVKAGWKEGEM CCCCEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCC >Mature Secondary Structure MKNVQRIPGDTPVQVGNSMGEMYGTELLEIPSDPVAAAVMAPVASTRNQTLIYGAGGSEY CCCCCCCCCCCCHHHCHHHHHHHCCHHEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC VDMDSLIEESLSLLGNSPVIIVVSAEEPAYALPAAYTAAYFKAPVVPVEERSIPQDLQNS CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHCCCCHHHHHH LENGEEKLILVAAPERLLSDQFLEELDALAEINRVADENLYKHSLLWARSRWGNFGWGMD HCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ENFHFDAYYNFVLANPETPEFAAAGLPMAYEGNYGPLIYTESEDLNDYVDQYFWRLSPDY CCEEEEEEEEEEEECCCCCCHHHCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCC FSFPSDGPFMNVRIVGDSESISYNAQARADLALEVRSFKNQVAGASGISLFGWSWFFIGF CCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH FGAIWALFIMPKRLPYSSFYSRIYWPMAILVFGPVGILAFLMAYHESSVMSMDHMVKFMR HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLWAKALSATIMSAGIGMALMIASMYLFQFFGLPLLRTFEFTSVYWLGSPMTTIMWLIMV HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCHHHHHHHHHH IPAIIASSLFYMGPMMADMREMKYWEGVKKALPVVSLSMVSASIGMFATAWYVMNWRGWM HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCC SGEDLWLWVTPLWISAAAGFFAALIPNYFMVKAGWKEGEM CCCCEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA