| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227836
Identifier: 21227836
GI number: 21227836
Start: 2075699
End: 2076319
Strand: Direct
Name: 21227836
Synonym: MM_1734
Alternate gene names: NA
Gene position: 2075699-2076319 (Clockwise)
Preceding gene: 21227835
Following gene: 21227837
Centisome position: 50.67
GC content: 38.16
Gene sequence:
>621_bases ATGACGAGTCGAAACAATGTAAAATATGGAATCGTTTTGGTTGGAGCACTCACTCTGATCGTGTTAGGTTTAGCATTCTC CAACTCTATGCAATCTTCACAAGAAAATAGTAAACCTTCAAATAATATCGATGAGCCCTTAAGCGGTAGCATGAGTTTTT TGCTTGAAGAATACACTCTTGAGGATTTAAGTAAAAATTCTGACGTGATCGTTATGGGTACAGTCAAGGAAATACTTCCA AGTAAATGGAATTCTGCCGACGGAAAAAGACCAGATAAAGTAGTTGAATTCGGCCCTTATGACCTCATCTATACTGATAT CATCATAAGTGTAGACAAATATGTCAAAAACCCATTATCATCCGAAGAGGTTATTGTGAGAGTGGAGGGTGGAAAAGTCG GAAATGATACAATGGCGGTAGAAGATGAACCGAGCTTTAAAACAGGTGAAAAAGTTTTGCTATATCTAACTGAAGATACT AGCCCAGGTACTAAGGATACTGGTCCTGAACACTTCAAAGTTACAGGATACATGCAGGGTAAGTTCACATTAACCGATGA TGGGAGAGCCATAGGATGGAATCAAAATATTAGTCAGGAGGAGTTATTGAACACAATTTAA
Upstream 100 bases:
>100_bases ATGTACAGTACTATGTCAACAGGGGAAACAAAGAAAAGAAGTTTACACTCCGATGATATAGCAGGTATCTGCTACATTTA CCCCTAATAGGTGATGAATT
Downstream 100 bases:
>100_bases TAATAAATGCAACTATTCAGGTAGCCTTTTGAAGGCTACACAATTTTTCCCCAGAACAAGGATAAATTGAGTGTAACTAT TCAGGTAGAGCCTTTGAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MTSRNNVKYGIVLVGALTLIVLGLAFSNSMQSSQENSKPSNNIDEPLSGSMSFLLEEYTLEDLSKNSDVIVMGTVKEILP SKWNSADGKRPDKVVEFGPYDLIYTDIIISVDKYVKNPLSSEEVIVRVEGGKVGNDTMAVEDEPSFKTGEKVLLYLTEDT SPGTKDTGPEHFKVTGYMQGKFTLTDDGRAIGWNQNISQEELLNTI
Sequences:
>Translated_206_residues MTSRNNVKYGIVLVGALTLIVLGLAFSNSMQSSQENSKPSNNIDEPLSGSMSFLLEEYTLEDLSKNSDVIVMGTVKEILP SKWNSADGKRPDKVVEFGPYDLIYTDIIISVDKYVKNPLSSEEVIVRVEGGKVGNDTMAVEDEPSFKTGEKVLLYLTEDT SPGTKDTGPEHFKVTGYMQGKFTLTDDGRAIGWNQNISQEELLNTI >Mature_205_residues TSRNNVKYGIVLVGALTLIVLGLAFSNSMQSSQENSKPSNNIDEPLSGSMSFLLEEYTLEDLSKNSDVIVMGTVKEILPS KWNSADGKRPDKVVEFGPYDLIYTDIIISVDKYVKNPLSSEEVIVRVEGGKVGNDTMAVEDEPSFKTGEKVLLYLTEDTS PGTKDTGPEHFKVTGYMQGKFTLTDDGRAIGWNQNISQEELLNTI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22681; Mature: 22550
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRNNVKYGIVLVGALTLIVLGLAFSNSMQSSQENSKPSNNIDEPLSGSMSFLLEEYTL CCCCCCCEEHHHHHHHHHHHHHHHHHHCHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHH EDLSKNSDVIVMGTVKEILPSKWNSADGKRPDKVVEFGPYDLIYTDIIISVDKYVKNPLS HHHCCCCCEEEEECHHHHCCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHCCCCC SEEVIVRVEGGKVGNDTMAVEDEPSFKTGEKVLLYLTEDTSPGTKDTGPEHFKVTGYMQG CCEEEEEECCCEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEE KFTLTDDGRAIGWNQNISQEELLNTI EEEECCCCCEECCCCCCCHHHHHHCC >Mature Secondary Structure TSRNNVKYGIVLVGALTLIVLGLAFSNSMQSSQENSKPSNNIDEPLSGSMSFLLEEYTL CCCCCCEEHHHHHHHHHHHHHHHHHHCHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHH EDLSKNSDVIVMGTVKEILPSKWNSADGKRPDKVVEFGPYDLIYTDIIISVDKYVKNPLS HHHCCCCCEEEEECHHHHCCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHCCCCC SEEVIVRVEGGKVGNDTMAVEDEPSFKTGEKVLLYLTEDTSPGTKDTGPEHFKVTGYMQG CCEEEEEECCCEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEE KFTLTDDGRAIGWNQNISQEELLNTI EEEECCCCCEECCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA