Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 21227832

GI number: 21227832

Start: 2072274

End: 2073395

Strand: Direct

Name: ydcM [C]

Synonym: MM_1730

Alternate gene names: 21227832

Gene position: 2072274-2073395 (Clockwise)

Preceding gene: 21227831

Following gene: 21227833

Centisome position: 50.59

GC content: 36.63

Gene sequence:

>1122_bases
ATGTTAAAAGTGCTTCGGTATAGAGTCTATCCTACAAAGGCTCAAAAAACAACTATGAATAATACTCTTGAGCTTTGTAG
GTGGACATATAACGAGACACTTGCACTCAGGAAAGATGCATGGGAGTCAGAGCAAAAGAATATAGGGTACTATGATTCTA
AGAAAATGATCCCTGAATGGAAAAAAGAAAAACCTGAATTGAAAACAGTTCATTCACAGGTATTACAGGAAGTAATCAAG
AGAGTAGATCTTGCCTTTCAAGCCTTTTTCCGTAGAGTTAAAACAGGAGAGAAGGCAGGCTATCCTAGATTCAGAGGATA
CGGAAGGTATGATAGTTTTACCTATACTCAATCAGGCTTTTCTCTGGATTCTGATAGGTTAACACTATCAAAAATAGGTG
ATATTAAAATCAAATTACATAGACCAGTAGAAGGTGAAATTAAAAGACTCAATGTTCGTAAGATGCCTACAGGAAAATGG
TTTGTTTCTTTTCTGGTTGAAACTGATACTCCTTTGGAATTACAAAAAACAGGATTATCAGTAGGTGTAGACGTAGGTAT
CAAGAGCTTCTTAACGCTTTCTGATGGTAATTATGTACCTAATCCTAGATTCTTTGTTACAGAAGAAAAGTTTCTGGCAA
AAGTCCAAAGAAAACTCTCCAAACTTGAAAAAGGAACACCTGAAAGAGCAAAAGCCTTGAAAGCTGTTCAACGTGTTCAC
GAAAGAATCTCAAACAAGAGAGAGGATTTTGTACAGAAAGTAAGTCTTAATCTGGTCAGGAATTATGACCTGATTACTTT
TGAAGATTTGAACATTAAAGGTATGATTAAAAACCACAAACTAGCAAAACACATAGCTGATGTTGCATGGAATAAGCTTG
TAACTATCACGTCTTACAAGGCAGAATGGGCTGGTAAACGTGTAGAGCTTGTCAATCCATGTAATACATCACAAATGTGC
TCTGGATGCGGTGAAATAGTTAAAAAAGAACTATCAGAGAGAATACACAGTTGTCCTTACTGTGGTCTTACTCTTGATAG
AGATCACAATGCCGCTATTAACATTATGAGATTGGGATTACAATCTCTCCAGAATTCTGGTAGATGCCCGTCACTTCAGT
GA

Upstream 100 bases:

>100_bases
GAATGGTCATCTCTGGAATCCGTCTTATTATGTTGGAACATGTGGAGATACAACAAAAGAAACTGTAAAAATGTATATTG
AAACTCAAAAGGTGAAATGA

Downstream 100 bases:

>100_bases
TGGGAGTAGTCACCCCCTTTCTACTTCTCTAAATAAGAGGGATTTCAAATGCAAAATATTAGAAAAATACTTTTACTTTT
GTTAATCATACTTTTAGCTG

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MLKVLRYRVYPTKAQKTTMNNTLELCRWTYNETLALRKDAWESEQKNIGYYDSKKMIPEWKKEKPELKTVHSQVLQEVIK
RVDLAFQAFFRRVKTGEKAGYPRFRGYGRYDSFTYTQSGFSLDSDRLTLSKIGDIKIKLHRPVEGEIKRLNVRKMPTGKW
FVSFLVETDTPLELQKTGLSVGVDVGIKSFLTLSDGNYVPNPRFFVTEEKFLAKVQRKLSKLEKGTPERAKALKAVQRVH
ERISNKREDFVQKVSLNLVRNYDLITFEDLNIKGMIKNHKLAKHIADVAWNKLVTITSYKAEWAGKRVELVNPCNTSQMC
SGCGEIVKKELSERIHSCPYCGLTLDRDHNAAINIMRLGLQSLQNSGRCPSLQ

Sequences:

>Translated_373_residues
MLKVLRYRVYPTKAQKTTMNNTLELCRWTYNETLALRKDAWESEQKNIGYYDSKKMIPEWKKEKPELKTVHSQVLQEVIK
RVDLAFQAFFRRVKTGEKAGYPRFRGYGRYDSFTYTQSGFSLDSDRLTLSKIGDIKIKLHRPVEGEIKRLNVRKMPTGKW
FVSFLVETDTPLELQKTGLSVGVDVGIKSFLTLSDGNYVPNPRFFVTEEKFLAKVQRKLSKLEKGTPERAKALKAVQRVH
ERISNKREDFVQKVSLNLVRNYDLITFEDLNIKGMIKNHKLAKHIADVAWNKLVTITSYKAEWAGKRVELVNPCNTSQMC
SGCGEIVKKELSERIHSCPYCGLTLDRDHNAAINIMRLGLQSLQNSGRCPSLQ
>Mature_373_residues
MLKVLRYRVYPTKAQKTTMNNTLELCRWTYNETLALRKDAWESEQKNIGYYDSKKMIPEWKKEKPELKTVHSQVLQEVIK
RVDLAFQAFFRRVKTGEKAGYPRFRGYGRYDSFTYTQSGFSLDSDRLTLSKIGDIKIKLHRPVEGEIKRLNVRKMPTGKW
FVSFLVETDTPLELQKTGLSVGVDVGIKSFLTLSDGNYVPNPRFFVTEEKFLAKVQRKLSKLEKGTPERAKALKAVQRVH
ERISNKREDFVQKVSLNLVRNYDLITFEDLNIKGMIKNHKLAKHIADVAWNKLVTITSYKAEWAGKRVELVNPCNTSQMC
SGCGEIVKKELSERIHSCPYCGLTLDRDHNAAINIMRLGLQSLQNSGRCPSLQ

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=354, Percent_Identity=32.4858757062147, Blast_Score=178, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43033; Mature: 43033

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKVLRYRVYPTKAQKTTMNNTLELCRWTYNETLALRKDAWESEQKNIGYYDSKKMIPEW
CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCHHCCCCCCCCCCCCCCH
KKEKPELKTVHSQVLQEVIKRVDLAFQAFFRRVKTGEKAGYPRFRGYGRYDSFTYTQSGF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC
SLDSDRLTLSKIGDIKIKLHRPVEGEIKRLNVRKMPTGKWFVSFLVETDTPLELQKTGLS
CCCCCCEEHEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCCHHHHCCCE
VGVDVGIKSFLTLSDGNYVPNPRFFVTEEKFLAKVQRKLSKLEKGTPERAKALKAVQRVH
EEECCCHHHEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ERISNKREDFVQKVSLNLVRNYDLITFEDLNIKGMIKNHKLAKHIADVAWNKLVTITSYK
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHCEEEEEECC
AEWAGKRVELVNPCNTSQMCSGCGEIVKKELSERIHSCPYCGLTLDRDHNAAINIMRLGL
HHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHH
QSLQNSGRCPSLQ
HHHHCCCCCCCCC
>Mature Secondary Structure
MLKVLRYRVYPTKAQKTTMNNTLELCRWTYNETLALRKDAWESEQKNIGYYDSKKMIPEW
CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCHHCCCCCCCCCCCCCCH
KKEKPELKTVHSQVLQEVIKRVDLAFQAFFRRVKTGEKAGYPRFRGYGRYDSFTYTQSGF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC
SLDSDRLTLSKIGDIKIKLHRPVEGEIKRLNVRKMPTGKWFVSFLVETDTPLELQKTGLS
CCCCCCEEHEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCCHHHHCCCE
VGVDVGIKSFLTLSDGNYVPNPRFFVTEEKFLAKVQRKLSKLEKGTPERAKALKAVQRVH
EEECCCHHHEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ERISNKREDFVQKVSLNLVRNYDLITFEDLNIKGMIKNHKLAKHIADVAWNKLVTITSYK
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHCEEEEEECC
AEWAGKRVELVNPCNTSQMCSGCGEIVKKELSERIHSCPYCGLTLDRDHNAAINIMRLGL
HHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHH
QSLQNSGRCPSLQ
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]