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The map label for this gene is nirD [H]

Identifier: 21227829

GI number: 21227829

Start: 2070673

End: 2071230

Strand: Direct

Name: nirD [H]

Synonym: MM_1727

Alternate gene names: 21227829

Gene position: 2070673-2071230 (Clockwise)

Preceding gene: 21227828

Following gene: 21227830

Centisome position: 50.55

GC content: 44.09

Gene sequence:

>558_bases
GTGATCAGGATGATTGACATTGAAAATTATAAAGATCGGCTCCAGAAAGAGGCTGCCGAATTTTCCTGTGATATGGATCC
TTATGAGGGGGAAGTTCCGGTAATAGAACTTGACGAGACCGACAAAAGAATCCTAAACCATATCCAGCAGGAAGTCCCCC
TCGATGTCGAACCTTTTGCAAGGTTAGGCGAGATTCTCGGGCTTCCGGAAATTGAGGTGATTGATAGGCTGCGTGAACTC
AACAGGAAAGGGGCAGTAAGAAGGGTAGGTCCTGTCCTCAGCATGAGAAATATGGGGGGCGTAAGTACTCTTGTAGCTCT
GAAAGTGCCCGAGTCCCGCATAGAGGAAATTGCTATTTTTATTAACGAGTATCCCGAAGTTTCCCATAATTATCTTAGAA
GTGCTGCACAATATAATCTCTGGTTTACGCTTTCGGCTCCAAATAAAAACAGGCTTGAGAGGATTCTAAGCGAAATTCGG
GAGAAAACAGGCTGTCCTCTTCTTGATCTTCCTACAAAGCACCTGTTTAAGATTCAGGTAAAATTTGATATCAGGTGA

Upstream 100 bases:

>100_bases
AAAAAGGTCTGTGCCGGCTGCAGGGCAAGGGCTTATGCTGCTACGGGCGATTATCTTGAAGAAGAGCCTTACTGTATCTA
CAGGCCACGAAAAAATGGTA

Downstream 100 bases:

>100_bases
AATTATGGATAAAACGGATGTAAAACTGCTAAAACTAGTGCAGGACGGAATTCCTATCACTCATTCCCCTTTCAAAGGAT
TTGCTTCTGAACTTGGAATC

Product: Heme biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MIRMIDIENYKDRLQKEAAEFSCDMDPYEGEVPVIELDETDKRILNHIQQEVPLDVEPFARLGEILGLPEIEVIDRLREL
NRKGAVRRVGPVLSMRNMGGVSTLVALKVPESRIEEIAIFINEYPEVSHNYLRSAAQYNLWFTLSAPNKNRLERILSEIR
EKTGCPLLDLPTKHLFKIQVKFDIR

Sequences:

>Translated_185_residues
MIRMIDIENYKDRLQKEAAEFSCDMDPYEGEVPVIELDETDKRILNHIQQEVPLDVEPFARLGEILGLPEIEVIDRLREL
NRKGAVRRVGPVLSMRNMGGVSTLVALKVPESRIEEIAIFINEYPEVSHNYLRSAAQYNLWFTLSAPNKNRLERILSEIR
EKTGCPLLDLPTKHLFKIQVKFDIR
>Mature_185_residues
MIRMIDIENYKDRLQKEAAEFSCDMDPYEGEVPVIELDETDKRILNHIQQEVPLDVEPFARLGEILGLPEIEVIDRLREL
NRKGAVRRVGPVLSMRNMGGVSTLVALKVPESRIEEIAIFINEYPEVSHNYLRSAAQYNLWFTLSAPNKNRLERILSEIR
EKTGCPLLDLPTKHLFKIQVKFDIR

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21443; Mature: 21443

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRMIDIENYKDRLQKEAAEFSCDMDPYEGEVPVIELDETDKRILNHIQQEVPLDVEPFA
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCHHHH
RLGEILGLPEIEVIDRLRELNRKGAVRRVGPVLSMRNMGGVSTLVALKVPESRIEEIAIF
HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHH
INEYPEVSHNYLRSAAQYNLWFTLSAPNKNRLERILSEIREKTGCPLLDLPTKHLFKIQV
HHCCCCHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEE
KFDIR
EEECC
>Mature Secondary Structure
MIRMIDIENYKDRLQKEAAEFSCDMDPYEGEVPVIELDETDKRILNHIQQEVPLDVEPFA
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCHHHH
RLGEILGLPEIEVIDRLRELNRKGAVRRVGPVLSMRNMGGVSTLVALKVPESRIEEIAIF
HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHH
INEYPEVSHNYLRSAAQYNLWFTLSAPNKNRLERILSEIREKTGCPLLDLPTKHLFKIQV
HHCCCCHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEE
KFDIR
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982003; 10984043 [H]