| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227824
Identifier: 21227824
GI number: 21227824
Start: 2066302
End: 2067339
Strand: Direct
Name: 21227824
Synonym: MM_1722
Alternate gene names: NA
Gene position: 2066302-2067339 (Clockwise)
Preceding gene: 21227822
Following gene: 21227825
Centisome position: 50.44
GC content: 39.6
Gene sequence:
>1038_bases GTGCCAGCAGTAAGTGCACAAGAAGTGATTGAGCAGAAGCTTACCTTTGGCCCGGAAACTCTTGAAGAATTGAAAAATGA TCCGAATTTTATTGCTGCTTATGGAAATATACCTACTTTTGAAAGTTTGGAAGAAAGGGAAAAGTGGCTTGATACGCTTG ATAAAATATATACTGAAGTTAACGACAATTTTGAAAAAGAAATGTCAAAGTATTTCTATCCAAATGGTCCTGTTATAGCC TATGGTTACACCATTGATGGCGTTCTTAAGGTTGCAATCGAAAAAGGACAAAAAATCGATGCAGCTAAAGAAAATGAGCT CTATGATCTATTTTCTAACTATGGGCAAAATATTGCCGTAAAAGATGTTCCATTAATAATTGTATATGAAGACCTTCCTA CGCCAACTAGTCGTACTAGCTCATGGCGTCCGATAATCGGAGGAATAAAAATATGCACAGAAAAACCAGATGGAATTAAG CAATCAACCCTTGGTTTTTCTGCACAAACTAGTAGTGGAACTAAAGGTTATGTTGTTGCAGGACATACTGCACCATCTAT TGGGGATCAAATATGGCAACCTACTGCTGGGCCGAGTGCTAACAAAGTCGGAACAGTGAGTAAAGTTGGGGGACATTATG CAGATGCCTCATGGGTTCCATATTCTAACGTAGCTGCAAAGATATACGATACAGATACGGATGTGCTAAAAGATGTAAAA TCACATGAGAATGCCGCTATAGGAGATACAGTTTATAAATCGGGTATCACGACAGGAAGGAGTTATGGAAGCGTTACTGA GATTAGAACATCGTACGATAACCCTCTTGGTACTTTGTATAGACAATATGTTGCAGGATATAACTGCGACGGTGGAGACA GTGGTGCCCCTGTATACGTTTATGTTAGTGGCGGTGTTAAAATTGTGGGAATCCATTGGGGAGGAGTAGGAACATATAAT TCAGGCTACTCGACTTCAATATTTTCTCCAGTGTCTGGAGTGCAGTCTGATTTAGGTGTAACTCCTCTTACAGCATAA
Upstream 100 bases:
>100_bases ATCTTGCCTCCTGGGAATGAACAGGAGTGAGTATGAAATGAAGAAAAAATTTGTATTAAGTTTACTGCTTGCCACAATGC TGCTGATGAGCATGGCTGTT
Downstream 100 bases:
>100_bases ATATGCAGTTAGAAACATTGCTCAGATTTCCACCTTGAAATAATGCGATATAAATTATATGCAGCAATATCGCATTATTC AAATTGGAATGATACTGACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MPAVSAQEVIEQKLTFGPETLEELKNDPNFIAAYGNIPTFESLEEREKWLDTLDKIYTEVNDNFEKEMSKYFYPNGPVIA YGYTIDGVLKVAIEKGQKIDAAKENELYDLFSNYGQNIAVKDVPLIIVYEDLPTPTSRTSSWRPIIGGIKICTEKPDGIK QSTLGFSAQTSSGTKGYVVAGHTAPSIGDQIWQPTAGPSANKVGTVSKVGGHYADASWVPYSNVAAKIYDTDTDVLKDVK SHENAAIGDTVYKSGITTGRSYGSVTEIRTSYDNPLGTLYRQYVAGYNCDGGDSGAPVYVYVSGGVKIVGIHWGGVGTYN SGYSTSIFSPVSGVQSDLGVTPLTA
Sequences:
>Translated_345_residues MPAVSAQEVIEQKLTFGPETLEELKNDPNFIAAYGNIPTFESLEEREKWLDTLDKIYTEVNDNFEKEMSKYFYPNGPVIA YGYTIDGVLKVAIEKGQKIDAAKENELYDLFSNYGQNIAVKDVPLIIVYEDLPTPTSRTSSWRPIIGGIKICTEKPDGIK QSTLGFSAQTSSGTKGYVVAGHTAPSIGDQIWQPTAGPSANKVGTVSKVGGHYADASWVPYSNVAAKIYDTDTDVLKDVK SHENAAIGDTVYKSGITTGRSYGSVTEIRTSYDNPLGTLYRQYVAGYNCDGGDSGAPVYVYVSGGVKIVGIHWGGVGTYN SGYSTSIFSPVSGVQSDLGVTPLTA >Mature_344_residues PAVSAQEVIEQKLTFGPETLEELKNDPNFIAAYGNIPTFESLEEREKWLDTLDKIYTEVNDNFEKEMSKYFYPNGPVIAY GYTIDGVLKVAIEKGQKIDAAKENELYDLFSNYGQNIAVKDVPLIIVYEDLPTPTSRTSSWRPIIGGIKICTEKPDGIKQ STLGFSAQTSSGTKGYVVAGHTAPSIGDQIWQPTAGPSANKVGTVSKVGGHYADASWVPYSNVAAKIYDTDTDVLKDVKS HENAAIGDTVYKSGITTGRSYGSVTEIRTSYDNPLGTLYRQYVAGYNCDGGDSGAPVYVYVSGGVKIVGIHWGGVGTYNS GYSTSIFSPVSGVQSDLGVTPLTA
Specific function: Unknown
COG id: COG1413
COG function: function code C; FOG: HEAT repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37191; Mature: 37059
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAVSAQEVIEQKLTFGPETLEELKNDPNFIAAYGNIPTFESLEEREKWLDTLDKIYTEV CCCCCHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH NDNFEKEMSKYFYPNGPVIAYGYTIDGVLKVAIEKGQKIDAAKENELYDLFSNYGQNIAV CCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEE KDVPLIIVYEDLPTPTSRTSSWRPIIGGIKICTEKPDGIKQSTLGFSAQTSSGTKGYVVA ECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCEECCCCCCCCEEEE GHTAPSIGDQIWQPTAGPSANKVGTVSKVGGHYADASWVPYSNVAAKIYDTDTDVLKDVK CCCCCCHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHH SHENAAIGDTVYKSGITTGRSYGSVTEIRTSYDNPLGTLYRQYVAGYNCDGGDSGAPVYV HCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEE YVSGGVKIVGIHWGGVGTYNSGYSTSIFSPVSGVQSDLGVTPLTA EEECCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC >Mature Secondary Structure PAVSAQEVIEQKLTFGPETLEELKNDPNFIAAYGNIPTFESLEEREKWLDTLDKIYTEV CCCCHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH NDNFEKEMSKYFYPNGPVIAYGYTIDGVLKVAIEKGQKIDAAKENELYDLFSNYGQNIAV CCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEE KDVPLIIVYEDLPTPTSRTSSWRPIIGGIKICTEKPDGIKQSTLGFSAQTSSGTKGYVVA ECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCEECCCCCCCCEEEE GHTAPSIGDQIWQPTAGPSANKVGTVSKVGGHYADASWVPYSNVAAKIYDTDTDVLKDVK CCCCCCHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHH SHENAAIGDTVYKSGITTGRSYGSVTEIRTSYDNPLGTLYRQYVAGYNCDGGDSGAPVYV HCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEE YVSGGVKIVGIHWGGVGTYNSGYSTSIFSPVSGVQSDLGVTPLTA EEECCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA