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The map label for this gene is ydcP [H]

Identifier: 21227802

GI number: 21227802

Start: 2042226

End: 2044874

Strand: Reverse

Name: ydcP [H]

Synonym: MM_1700

Alternate gene names: 21227802

Gene position: 2044874-2042226 (Counterclockwise)

Preceding gene: 21227804

Following gene: 21227801

Centisome position: 49.92

GC content: 47.19

Gene sequence:

>2649_bases
ATGCCAAAGTTTAATAAAGAGCATACTCAGTTATCCCATCTGATGAAGCCTGCAAAACCTGAACTGCTGGCTCCAGCCGG
CGGCATGGAAGCTCTGATGGCAGCCGTAGAAAACGGAGCCGATGCTGTATACCTTGGAGCCAGGGCTTTTAGCGCCCGAG
GATATGCATCCAATTTCTCAGAAGAGGAGATTGAAAATGCTATTGATTACGCCCACCTCAGAGGCGTGAAGGTATACGTA
ACAGTAAATACCCTGCTCAAGGAAGGGGAAATAGAAAGCGCCCTTATGCTGCTCTCCCGCCTGAGAGAAATGGGGGTAGA
CGCGATAATCATTCAGGACCTCGGGCTCATTTCCCTTTCCAGAAAATACCTCCCTGACCTTCCACTCCATGCGAGTACTC
AGATGACCCTGCACAACAGTGTAGGTGCGGGGTTTATAAAGGGTCTGGGAATCGAAAGAATTGTGCTTTCACGGGAAGTT
TCGCTTGAAGACATAAAAACGGTAAAAGAAAGAAATGACGTCGAGATCGAGGTATTCATACACGGGGCTCTCTGTATTTC
ATATTCAGGGCAGTGCCTCCTTAGCAGCCTGATAGGAGGAAGAAGCGGAAACAGAGGATACTGTGCCCAGCCGTGCCGCA
AAAAGTACAGGCTTTACTGTAACGGGAAGCAGGTAAAAACTACAGGCAGCTATCTTTTGAGCCCTAAAGACCTTAACACG
GCTACAGCCCTTGGGCCTCTTATAGAATCAGGGATAGAGTCTTTCAAAATAGAAGGCAGGATGAAAAGGCCGGAATACGT
TGCAGGAGTTGTCAGGATCTACCGCCGCCTGATTGACAGATACCTGAAAGACCCCGCCGGATATTCAGTTTCCGAAGAGG
AACGGGAGACTCTTACTCAATTATTTAACCGCGGATTTACCTCAGGCTACTTTTTTGAGAACCCGCGAGGAAAACTCATG
AGCCGGGAAAACCCGCATAACCGCGGAATTCCTGCCGGCAGAGTTATCAGTTATGACAGGCGCACAAAACATCTCCGCGT
AAAACTCTCAAACTCCCTCCGCCTGGGGGACGGAATAATGGTCGAAAACGCAGAGACCCGACCTGAAGATAAAGGAAAAA
TCATATCCTCGATGTATACTGAAAAAGGCCCTGTATACAGCGCAGAAAGAGGCGAAGTCGTAGAAATTCCTTTTGACTCA
AGGGCGCCGTCAGGGAGCACAGTTTACAGGACACACGACAAGAAGCTTATGGACTCCCTCAAAAAAGAAAGCGAATCAGG
GTCCCTGAGGCCAAAGATCCATATCTCCCTCAAAGCAACCATCGTTCAGGGTAAACCTGCCAGACTCGAAGTGATGGACA
GAGATTCAAATTTCGTGGTAGTTGAGTCCGGGTATCTTGTCGAGAAGGCAGAGAAATCTCCAACCTCAAAAGCACAGATT
GAAAAACAACTCACAAAGCTTGGGAACACTCTTTTTGAGGCAGCCGAACTGGAAGTAAATACGGAAGAGGATATTTTCAT
TCCCGTAGGGCAGTTGAATGACCTCAGGACACAGGCAGTTTCTCAGCTTGAAAAACTGAGAATATCAAAATGGAAACGGG
AGACACTTGAAATATTTCCTCTCTCTGCACCCGGAGAAAAAAAGGCAGCAGAAATAAAGAAACCGGAGACGACAGGAGGA
TTGGAGGAGAGAGGAGAGAAGGATAGAACGAAATCGCAGAAACCTTCAGAAAGACCCTTAATTTCGGTTTCCGTATATTC
CCTGGAAGAGCTTGAAGGGGCTCTTGAAGGCGGAGCAGACTGCGTTTACTTCGGAGAAGGGCTTTTCAGGAAACCAGAAA
CAGCCGAAAAAGAGAAAAGCTTCAGTAAAGAAGGGATTTCCGGAACTGACCTTGATTTAATTTTTGAAAGCTCTGTCCTG
AAAACCAGAGATGCAGGCAGAAAAATATACTTCACTACTCCAAAAATAGTGAAGGACTCTGAAATAAAAACAGTAGAAGA
GCTTCTCTCCCGTGCAGAAAAGTTCGGAGCCGACGGGGTTATTGTTTCAAACCTTGGGACATTCAGCCTCGCAAAAGAAA
AAGGGGTCCCATGCGTCGCAGACAGTTCTCTGAATATTTATAATGGTTACACTTTTGCTCTACTTCTGGAAAATAGGGCA
AAAATGGCAGTCCTTTCTCCCGAACTGACACTTGAAGAGATAAAAGAGGTGGCTTCTAAAGGGCCTGCGGAATGCATTGT
GCACGGCCGCCTCGAACTGATGGAATCTGAACACTGCATCGCCGGCGGGCTGCTCGGGGGAAATAAAGGGCAGTGCAGCG
CTCCCTGCCGCTCAGGAAATTTTAAGCTTGTGGATGAGAAGAACTACGAGTTTCCCCTTCTCATGGACTACCAGTGCAGG
ACTCATCTCCTAAACTCAAGGTCTCTCTGCATGCTCGAATATGTTCCTGCGCTTATAGAAAGCGGGATTTCAAGCCTGAG
GATAGAAACCCTGGGGATGGATGGGAGCGCAGAAGAGGTCAGAAAAATTACGGAAAAATACAGAAAAGCCGTTGACGCAT
ATTATAAGTCAGGAGAAAAGACAAAGGAAAAATGTGAAGGCCTCGGAAAGGGTTTTACCACAGGACACTATTTCAGAGGT
GTACAGTAA

Upstream 100 bases:

>100_bases
TGCCTGCCAGTTAAACAATTCCTCACACTAAATAACTCCTCAAATTAAACAATTTCTCAGATTAAACAGTTACCGATCAG
GTATTCCTGAAAAAGAAAGG

Downstream 100 bases:

>100_bases
GGAATCCTGTGAGAGGTGTGAAGAAATGGAAAAAATAATACCTTCGGGACAGGGTAAAAAAAGTATCTTCCTTTCGGGAT
CCATAAGGGGAGGAAGACAG

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 882; Mature: 881

Protein sequence:

>882_residues
MPKFNKEHTQLSHLMKPAKPELLAPAGGMEALMAAVENGADAVYLGARAFSARGYASNFSEEEIENAIDYAHLRGVKVYV
TVNTLLKEGEIESALMLLSRLREMGVDAIIIQDLGLISLSRKYLPDLPLHASTQMTLHNSVGAGFIKGLGIERIVLSREV
SLEDIKTVKERNDVEIEVFIHGALCISYSGQCLLSSLIGGRSGNRGYCAQPCRKKYRLYCNGKQVKTTGSYLLSPKDLNT
ATALGPLIESGIESFKIEGRMKRPEYVAGVVRIYRRLIDRYLKDPAGYSVSEEERETLTQLFNRGFTSGYFFENPRGKLM
SRENPHNRGIPAGRVISYDRRTKHLRVKLSNSLRLGDGIMVENAETRPEDKGKIISSMYTEKGPVYSAERGEVVEIPFDS
RAPSGSTVYRTHDKKLMDSLKKESESGSLRPKIHISLKATIVQGKPARLEVMDRDSNFVVVESGYLVEKAEKSPTSKAQI
EKQLTKLGNTLFEAAELEVNTEEDIFIPVGQLNDLRTQAVSQLEKLRISKWKRETLEIFPLSAPGEKKAAEIKKPETTGG
LEERGEKDRTKSQKPSERPLISVSVYSLEELEGALEGGADCVYFGEGLFRKPETAEKEKSFSKEGISGTDLDLIFESSVL
KTRDAGRKIYFTTPKIVKDSEIKTVEELLSRAEKFGADGVIVSNLGTFSLAKEKGVPCVADSSLNIYNGYTFALLLENRA
KMAVLSPELTLEEIKEVASKGPAECIVHGRLELMESEHCIAGGLLGGNKGQCSAPCRSGNFKLVDEKNYEFPLLMDYQCR
THLLNSRSLCMLEYVPALIESGISSLRIETLGMDGSAEEVRKITEKYRKAVDAYYKSGEKTKEKCEGLGKGFTTGHYFRG
VQ

Sequences:

>Translated_882_residues
MPKFNKEHTQLSHLMKPAKPELLAPAGGMEALMAAVENGADAVYLGARAFSARGYASNFSEEEIENAIDYAHLRGVKVYV
TVNTLLKEGEIESALMLLSRLREMGVDAIIIQDLGLISLSRKYLPDLPLHASTQMTLHNSVGAGFIKGLGIERIVLSREV
SLEDIKTVKERNDVEIEVFIHGALCISYSGQCLLSSLIGGRSGNRGYCAQPCRKKYRLYCNGKQVKTTGSYLLSPKDLNT
ATALGPLIESGIESFKIEGRMKRPEYVAGVVRIYRRLIDRYLKDPAGYSVSEEERETLTQLFNRGFTSGYFFENPRGKLM
SRENPHNRGIPAGRVISYDRRTKHLRVKLSNSLRLGDGIMVENAETRPEDKGKIISSMYTEKGPVYSAERGEVVEIPFDS
RAPSGSTVYRTHDKKLMDSLKKESESGSLRPKIHISLKATIVQGKPARLEVMDRDSNFVVVESGYLVEKAEKSPTSKAQI
EKQLTKLGNTLFEAAELEVNTEEDIFIPVGQLNDLRTQAVSQLEKLRISKWKRETLEIFPLSAPGEKKAAEIKKPETTGG
LEERGEKDRTKSQKPSERPLISVSVYSLEELEGALEGGADCVYFGEGLFRKPETAEKEKSFSKEGISGTDLDLIFESSVL
KTRDAGRKIYFTTPKIVKDSEIKTVEELLSRAEKFGADGVIVSNLGTFSLAKEKGVPCVADSSLNIYNGYTFALLLENRA
KMAVLSPELTLEEIKEVASKGPAECIVHGRLELMESEHCIAGGLLGGNKGQCSAPCRSGNFKLVDEKNYEFPLLMDYQCR
THLLNSRSLCMLEYVPALIESGISSLRIETLGMDGSAEEVRKITEKYRKAVDAYYKSGEKTKEKCEGLGKGFTTGHYFRG
VQ
>Mature_881_residues
PKFNKEHTQLSHLMKPAKPELLAPAGGMEALMAAVENGADAVYLGARAFSARGYASNFSEEEIENAIDYAHLRGVKVYVT
VNTLLKEGEIESALMLLSRLREMGVDAIIIQDLGLISLSRKYLPDLPLHASTQMTLHNSVGAGFIKGLGIERIVLSREVS
LEDIKTVKERNDVEIEVFIHGALCISYSGQCLLSSLIGGRSGNRGYCAQPCRKKYRLYCNGKQVKTTGSYLLSPKDLNTA
TALGPLIESGIESFKIEGRMKRPEYVAGVVRIYRRLIDRYLKDPAGYSVSEEERETLTQLFNRGFTSGYFFENPRGKLMS
RENPHNRGIPAGRVISYDRRTKHLRVKLSNSLRLGDGIMVENAETRPEDKGKIISSMYTEKGPVYSAERGEVVEIPFDSR
APSGSTVYRTHDKKLMDSLKKESESGSLRPKIHISLKATIVQGKPARLEVMDRDSNFVVVESGYLVEKAEKSPTSKAQIE
KQLTKLGNTLFEAAELEVNTEEDIFIPVGQLNDLRTQAVSQLEKLRISKWKRETLEIFPLSAPGEKKAAEIKKPETTGGL
EERGEKDRTKSQKPSERPLISVSVYSLEELEGALEGGADCVYFGEGLFRKPETAEKEKSFSKEGISGTDLDLIFESSVLK
TRDAGRKIYFTTPKIVKDSEIKTVEELLSRAEKFGADGVIVSNLGTFSLAKEKGVPCVADSSLNIYNGYTFALLLENRAK
MAVLSPELTLEEIKEVASKGPAECIVHGRLELMESEHCIAGGLLGGNKGQCSAPCRSGNFKLVDEKNYEFPLLMDYQCRT
HLLNSRSLCMLEYVPALIESGISSLRIETLGMDGSAEEVRKITEKYRKAVDAYYKSGEKTKEKCEGLGKGFTTGHYFRGV
Q

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=535, Percent_Identity=31.0280373831776, Blast_Score=252, Evalue=6e-68,
Organism=Escherichia coli, GI1788397, Length=341, Percent_Identity=34.6041055718475, Blast_Score=180, Evalue=4e-46,
Organism=Escherichia coli, GI1789548, Length=311, Percent_Identity=31.1897106109325, Blast_Score=152, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 97794; Mature: 97663

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFNKEHTQLSHLMKPAKPELLAPAGGMEALMAAVENGADAVYLGARAFSARGYASNFS
CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCC
EEEIENAIDYAHLRGVKVYVTVNTLLKEGEIESALMLLSRLREMGVDAIIIQDLGLISLS
HHHHHHHHHHHHHCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
RKYLPDLPLHASTQMTLHNSVGAGFIKGLGIERIVLSREVSLEDIKTVKERNDVEIEVFI
HHHCCCCCCCCCCEEEEECCCCCHHHHCCCHHEEEHHCCCCHHHHHHHHCCCCCEEEEEE
HGALCISYSGQCLLSSLIGGRSGNRGYCAQPCRKKYRLYCNGKQVKTTGSYLLSPKDLNT
EEEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHCEEEEECCCEEEECCCEEECCCCCCH
ATALGPLIESGIESFKIEGRMKRPEYVAGVVRIYRRLIDRYLKDPAGYSVSEEERETLTQ
HHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LFNRGFTSGYFFENPRGKLMSRENPHNRGIPAGRVISYDRRTKHLRVKLSNSLRLGDGIM
HHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCEEECCCEE
VENAETRPEDKGKIISSMYTEKGPVYSAERGEVVEIPFDSRAPSGSTVYRTHDKKLMDSL
EECCCCCCCHHHHHHHHHHHCCCCEEECCCCCEEECCCCCCCCCCCEEEEECHHHHHHHH
KKESESGSLRPKIHISLKATIVQGKPARLEVMDRDSNFVVVESGYLVEKAEKSPTSKAQI
HHCCCCCCCCEEEEEEEEEEEECCCCCEEEEEECCCCEEEEECCCEEEHHCCCCCHHHHH
EKQLTKLGNTLFEAAELEVNTEEDIFIPVGQLNDLRTQAVSQLEKLRISKWKRETLEIFP
HHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
LSAPGEKKAAEIKKPETTGGLEERGEKDRTKSQKPSERPLISVSVYSLEELEGALEGGAD
CCCCCCCHHHHCCCCCCCCCHHHCCCHHHHCCCCCCCCCEEEEEEHHHHHHHHHHCCCCC
CVYFGEGLFRKPETAEKEKSFSKEGISGTDLDLIFESSVLKTRDAGRKIYFTTPKIVKDS
EEEECCCCCCCCCCHHHHHHHHHCCCCCCCHHEEECCHHHHHHCCCCEEEEECCCCCCCC
EIKTVEELLSRAEKFGADGVIVSNLGTFSLAKEKGVPCVADSSLNIYNGYTFALLLENRA
HHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHCCCCEEECCCCEEECCEEEEEEECCCC
KMAVLSPELTLEEIKEVASKGPAECIVHGRLELMESEHCIAGGLLGGNKGQCSAPCRSGN
CEEEECCCCCHHHHHHHHCCCCCCEEEHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
FKLVDEKNYEFPLLMDYQCRTHLLNSRSLCMLEYVPALIESGISSLRIETLGMDGSAEEV
EEEEECCCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCHHHH
RKITEKYRKAVDAYYKSGEKTKEKCEGLGKGFTTGHYFRGVQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKFNKEHTQLSHLMKPAKPELLAPAGGMEALMAAVENGADAVYLGARAFSARGYASNFS
CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCC
EEEIENAIDYAHLRGVKVYVTVNTLLKEGEIESALMLLSRLREMGVDAIIIQDLGLISLS
HHHHHHHHHHHHHCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
RKYLPDLPLHASTQMTLHNSVGAGFIKGLGIERIVLSREVSLEDIKTVKERNDVEIEVFI
HHHCCCCCCCCCCEEEEECCCCCHHHHCCCHHEEEHHCCCCHHHHHHHHCCCCCEEEEEE
HGALCISYSGQCLLSSLIGGRSGNRGYCAQPCRKKYRLYCNGKQVKTTGSYLLSPKDLNT
EEEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHCEEEEECCCEEEECCCEEECCCCCCH
ATALGPLIESGIESFKIEGRMKRPEYVAGVVRIYRRLIDRYLKDPAGYSVSEEERETLTQ
HHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LFNRGFTSGYFFENPRGKLMSRENPHNRGIPAGRVISYDRRTKHLRVKLSNSLRLGDGIM
HHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCEEECCCEE
VENAETRPEDKGKIISSMYTEKGPVYSAERGEVVEIPFDSRAPSGSTVYRTHDKKLMDSL
EECCCCCCCHHHHHHHHHHHCCCCEEECCCCCEEECCCCCCCCCCCEEEEECHHHHHHHH
KKESESGSLRPKIHISLKATIVQGKPARLEVMDRDSNFVVVESGYLVEKAEKSPTSKAQI
HHCCCCCCCCEEEEEEEEEEEECCCCCEEEEEECCCCEEEEECCCEEEHHCCCCCHHHHH
EKQLTKLGNTLFEAAELEVNTEEDIFIPVGQLNDLRTQAVSQLEKLRISKWKRETLEIFP
HHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
LSAPGEKKAAEIKKPETTGGLEERGEKDRTKSQKPSERPLISVSVYSLEELEGALEGGAD
CCCCCCCHHHHCCCCCCCCCHHHCCCHHHHCCCCCCCCCEEEEEEHHHHHHHHHHCCCCC
CVYFGEGLFRKPETAEKEKSFSKEGISGTDLDLIFESSVLKTRDAGRKIYFTTPKIVKDS
EEEECCCCCCCCCCHHHHHHHHHCCCCCCCHHEEECCHHHHHHCCCCEEEEECCCCCCCC
EIKTVEELLSRAEKFGADGVIVSNLGTFSLAKEKGVPCVADSSLNIYNGYTFALLLENRA
HHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHCCCCEEECCCCEEECCEEEEEEECCCC
KMAVLSPELTLEEIKEVASKGPAECIVHGRLELMESEHCIAGGLLGGNKGQCSAPCRSGN
CEEEECCCCCHHHHHHHHCCCCCCEEEHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
FKLVDEKNYEFPLLMDYQCRTHLLNSRSLCMLEYVPALIESGISSLRIETLGMDGSAEEV
EEEEECCCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCHHHH
RKITEKYRKAVDAYYKSGEKTKEKCEGLGKGFTTGHYFRGVQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]