| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is mttC [H]
Identifier: 21227792
GI number: 21227792
Start: 2032885
End: 2033535
Strand: Direct
Name: mttC [H]
Synonym: MM_1690
Alternate gene names: 21227792
Gene position: 2032885-2033535 (Clockwise)
Preceding gene: 21227791
Following gene: 21227793
Centisome position: 49.63
GC content: 49.62
Gene sequence:
>651_bases ATGGCAAACAAAGAAGAAATAATTGCAAAAGCAAAAGACGCAATCACTGATTTTGATGATGAACTTGCAGCAGAAGTCGC AGCAGAAGCTCTCGCTGCAGGGGTTGACCCGGTAGAACTCATTGAGAAAGGCTTTACTGCTGGTATGCAGGAAGTCGGCG AACAGTTCGAACAGGGTACCCTTTTCCTCCCTCACGTGCTTGCAGCCGCAGAAGCGATGAATGCAGGCATAGAGGTAATT AAGCCGGAAATGGAAAAGCGCAAGTCTCAGACCAAGAGCCTCGGAACCATTGTCATCGGGACCATCGAAGGCGATATCCA CTCCATTGGAAAAGACATTGTTGCCTCCATGCTGAATATTGCAGGCTTTAAAGTTGTGGACCTCGGAAGAGATGTCCCGA TAAAAACCTTCGTTGAAAAGGCAAAGGAAATCAAACCACAGATAATCGCATCCTCCGCCCTTATGACCACAACCATGGTC AACCAGATCCAGATCGAGGAACAGCTTAAAGAAGCAGGTATCCGCGGCCAGGTCAAGACCATGGTCGGTGGCGCCCCCGT TACCCAGGACTGGGCTGACAAGATCGGCGCAGACATCTATGGGGAAAGTGCCACAGATGTCGTCAGCAAGGTAAAAGCAG CCTTACTCTAA
Upstream 100 bases:
>100_bases TCGATGCAGACATCCTCAAGGACATGAAAGCTGTTGTGGACAAAGCTGACAAAGCTTTCAGAGGCATGTAATTATACCAG GATATTCAGGAGATCTAAAA
Downstream 100 bases:
>100_bases AGGCTCAATAAGCAGAAAATGCAGGAGATTTTGTCTAGTGCATTTTCTGTTCAGCTTTATTTTGTACAGTTGCTGCGAAA CCTGTAGTTGACGGCATAGG
Product: dimethylamine corrinoid protein
Products: L-Methionine; 5,6,7,8-Tetrahydrofolate [C]
Alternate protein names: TCP 1 [H]
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MANKEEIIAKAKDAITDFDDELAAEVAAEALAAGVDPVELIEKGFTAGMQEVGEQFEQGTLFLPHVLAAAEAMNAGIEVI KPEMEKRKSQTKSLGTIVIGTIEGDIHSIGKDIVASMLNIAGFKVVDLGRDVPIKTFVEKAKEIKPQIIASSALMTTTMV NQIQIEEQLKEAGIRGQVKTMVGGAPVTQDWADKIGADIYGESATDVVSKVKAALL
Sequences:
>Translated_216_residues MANKEEIIAKAKDAITDFDDELAAEVAAEALAAGVDPVELIEKGFTAGMQEVGEQFEQGTLFLPHVLAAAEAMNAGIEVI KPEMEKRKSQTKSLGTIVIGTIEGDIHSIGKDIVASMLNIAGFKVVDLGRDVPIKTFVEKAKEIKPQIIASSALMTTTMV NQIQIEEQLKEAGIRGQVKTMVGGAPVTQDWADKIGADIYGESATDVVSKVKAALL >Mature_215_residues ANKEEIIAKAKDAITDFDDELAAEVAAEALAAGVDPVELIEKGFTAGMQEVGEQFEQGTLFLPHVLAAAEAMNAGIEVIK PEMEKRKSQTKSLGTIVIGTIEGDIHSIGKDIVASMLNIAGFKVVDLGRDVPIKTFVEKAKEIKPQIIASSALMTTTMVN QIQIEEQLKEAGIRGQVKTMVGGAPVTQDWADKIGADIYGESATDVVSKVKAALL
Specific function: Acts probably as a methyl group carrier between mttB and either mtbA or mtaA [H]
COG id: COG5012
COG function: function code R; Predicted cobalamin binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI169790923, Length=164, Percent_Identity=32.9268292682927, Blast_Score=96, Evalue=3e-20, Organism=Escherichia coli, GI1790450, Length=196, Percent_Identity=31.1224489795918, Blast_Score=105, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17535405, Length=176, Percent_Identity=31.8181818181818, Blast_Score=95, Evalue=3e-20,
Paralogues:
None
Copy number: 513 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1320 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR003759 - InterPro: IPR012741 [H]
Pfam domain/function: PF02310 B12-binding; PF02607 B12-binding_2 [H]
EC number: 2.1.1.13 [C]
Molecular weight: Translated: 22950; Mature: 22819
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANKEEIIAKAKDAITDFDDELAAEVAAEALAAGVDPVELIEKGFTAGMQEVGEQFEQGT CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC LFLPHVLAAAEAMNAGIEVIKPEMEKRKSQTKSLGTIVIGTIEGDIHSIGKDIVASMLNI CHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHH AGFKVVDLGRDVPIKTFVEKAKEIKPQIIASSALMTTTMVNQIQIEEQLKEAGIRGQVKT CCCEEEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH MVGGAPVTQDWADKIGADIYGESATDVVSKVKAALL HHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure ANKEEIIAKAKDAITDFDDELAAEVAAEALAAGVDPVELIEKGFTAGMQEVGEQFEQGT CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC LFLPHVLAAAEAMNAGIEVIKPEMEKRKSQTKSLGTIVIGTIEGDIHSIGKDIVASMLNI CHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHH AGFKVVDLGRDVPIKTFVEKAKEIKPQIIASSALMTTTMVNQIQIEEQLKEAGIRGQVKT CCCEEEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH MVGGAPVTQDWADKIGADIYGESATDVVSKVKAALL HHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: ATP; Cobinamide; S-adenosyl-L-methionine [C]
Metal ions: Mg2+ [C]
Kcat value (1/min): 500-780 [C]
Specific activity: 3.8
Km value (mM): 0.035 {S-methyltetrahydrofolate}} 0.0016 {S-adenosyl-L-methionine}} 0.00065 {S-adenosyl-L-methionine}} 0.06 {methyltetrahydrofolate}} 0.03 {methyltetrahydrofolate}} 0.016 {homocysteine}} [C]
Substrates: 5-Methyltetrahydrofolate; L-Homocysteine [C]
Specific reaction: 5-Methyltetrahydrofolate + L-Homocysteine --> L-Methionine + 5,6,7,8-Tetrahydrofolate [C]
General reaction: Methyl group transfer [C]
Inhibitor: 5, 6-Dimethyl benzimidazole; alpha-Ribazole 3'-phosphate; Be2+; Cobinamide; Propyl iodide; Sr2+ [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]