Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 21227777

GI number: 21227777

Start: 2007971

End: 2008648

Strand: Direct

Name: yggS [C]

Synonym: MM_1675

Alternate gene names: 21227777

Gene position: 2007971-2008648 (Clockwise)

Preceding gene: 21227774

Following gene: 21227778

Centisome position: 49.02

GC content: 44.1

Gene sequence:

>678_bases
TTGATAAAAACAGATTTAGGGACAGCGATGCCAGTCTATGAAAATACAAAGTTAATCCTTGAAAAGATTGGAAGCACAAC
ACTGGTTTGTGTTACCAAGACGATTGAACCTGAACGGATAAACGAAGCCATTCGAGCCGGAGCCACTATCATTGGAGAGA
ACCGGGTTCAGGAGTACGAGGATAAACGTGATGATATACTGCCCTGTGAGACACACCTTATAGGCCATCTGCAGGCAAAT
AAAGTCAAAAAAGCCGTACATCTATTTGATGTTATCCAGTCAATTGACTCCCTGAAGTTGATACAGAATATTGATATGAG
AGCCAGGGATATTGACAAAGTACAGAGAGTCTATCTTCAGGTTAACATCGGCAACGAACCGCAAAAATACGGATTCCGAC
CTGATGAGATAAAAAACGCAATAACAGAGATCCGCTCTTTAAGGAATGTCCGTGTTGAAGGCCTCATGTGCATCCCTCCT
TTCGTACCCCCTGAGCAAACCCGATCCTATTTCAGGAAGATGAAGGCCCTTTTTGATGAAATAAAGCAGGAAAACCGGGA
CAATATCGATATCAGGACGCTATCCATGGGCATGTCCAGTGACTACAGGATTGCCATCGAGGAAGGAGCCACAATGGTAC
GTGTGGGTTCTTCCATATTCGGGAAGAGGAAGTACTGA

Upstream 100 bases:

>100_bases
AATTGCGTATTTGAAATGATTCCAATTTATTGTCATTATTAATATAATTATATTTTCGCTCCATAAAGCCATAATTGGAA
TCATTTAAATACAACTACTT

Downstream 100 bases:

>100_bases
AAGTACTTTTCTTTTATTAAAATGAATAAATATTTTTTCTCGTTATAACTTATGTTATTTTTTAGCTTCCGGCAAAATAA
AAACAACTGTACTTACTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MIKTDLGTAMPVYENTKLILEKIGSTTLVCVTKTIEPERINEAIRAGATIIGENRVQEYEDKRDDILPCETHLIGHLQAN
KVKKAVHLFDVIQSIDSLKLIQNIDMRARDIDKVQRVYLQVNIGNEPQKYGFRPDEIKNAITEIRSLRNVRVEGLMCIPP
FVPPEQTRSYFRKMKALFDEIKQENRDNIDIRTLSMGMSSDYRIAIEEGATMVRVGSSIFGKRKY

Sequences:

>Translated_225_residues
MIKTDLGTAMPVYENTKLILEKIGSTTLVCVTKTIEPERINEAIRAGATIIGENRVQEYEDKRDDILPCETHLIGHLQAN
KVKKAVHLFDVIQSIDSLKLIQNIDMRARDIDKVQRVYLQVNIGNEPQKYGFRPDEIKNAITEIRSLRNVRVEGLMCIPP
FVPPEQTRSYFRKMKALFDEIKQENRDNIDIRTLSMGMSSDYRIAIEEGATMVRVGSSIFGKRKY
>Mature_225_residues
MIKTDLGTAMPVYENTKLILEKIGSTTLVCVTKTIEPERINEAIRAGATIIGENRVQEYEDKRDDILPCETHLIGHLQAN
KVKKAVHLFDVIQSIDSLKLIQNIDMRARDIDKVQRVYLQVNIGNEPQKYGFRPDEIKNAITEIRSLRNVRVEGLMCIPP
FVPPEQTRSYFRKMKALFDEIKQENRDNIDIRTLSMGMSSDYRIAIEEGATMVRVGSSIFGKRKY

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=211, Percent_Identity=33.175355450237, Blast_Score=92, Evalue=3e-19,
Organism=Escherichia coli, GI1789321, Length=208, Percent_Identity=37.0192307692308, Blast_Score=107, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17533025, Length=217, Percent_Identity=31.7972350230415, Blast_Score=84, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=191, Percent_Identity=34.0314136125654, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=35.6481481481481, Blast_Score=94, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25800; Mature: 25800

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTDLGTAMPVYENTKLILEKIGSTTLVCVTKTIEPERINEAIRAGATIIGENRVQEYE
CCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEECCHHHHHHH
DKRDDILPCETHLIGHLQANKVKKAVHLFDVIQSIDSLKLIQNIDMRARDIDKVQRVYLQ
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEE
VNIGNEPQKYGFRPDEIKNAITEIRSLRNVRVEGLMCIPPFVPPEQTRSYFRKMKALFDE
EECCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
IKQENRDNIDIRTLSMGMSSDYRIAIEEGATMVRVGSSIFGKRKY
HHHCCCCCCEEEEEEECCCCCCEEEECCCCEEEEECHHHHCCCCC
>Mature Secondary Structure
MIKTDLGTAMPVYENTKLILEKIGSTTLVCVTKTIEPERINEAIRAGATIIGENRVQEYE
CCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEECCHHHHHHH
DKRDDILPCETHLIGHLQANKVKKAVHLFDVIQSIDSLKLIQNIDMRARDIDKVQRVYLQ
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEE
VNIGNEPQKYGFRPDEIKNAITEIRSLRNVRVEGLMCIPPFVPPEQTRSYFRKMKALFDE
EECCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
IKQENRDNIDIRTLSMGMSSDYRIAIEEGATMVRVGSSIFGKRKY
HHHCCCCCCEEEEEEECCCCCCEEEECCCCEEEEECHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]