| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is pdtaS [H]
Identifier: 21227773
GI number: 21227773
Start: 2001789
End: 2004335
Strand: Direct
Name: pdtaS [H]
Synonym: MM_1671
Alternate gene names: 21227773
Gene position: 2001789-2004335 (Clockwise)
Preceding gene: 21227771
Following gene: 21227774
Centisome position: 48.87
GC content: 42.95
Gene sequence:
>2547_bases ATGAAAGAGAACCTGAAAAATTCTGGCATAGATCTAAAACGTGTTGAGGAAACTCCGGACCAGAGTGAACAGTATTTCAG GCAGAAGCTGGAGGACAGTCTTTCACCTTCTCAGAAGGTAGAGGACCTTGAGCTGACTGAAATTATCAATGTCCATGCTA TTGAGCCTTTAATGGACAATTTCTACAAACTCACTAACATTCCCATAGGCTTAAACGATCTTAAAGGAAATGTTCTGATA GGCGTTGGCTGGCAGGATATCTGCACCAGGTTTCACAGGGTTCACCCTGAGACATGCAAGCACTGCATAGCAAGTGACAT CATGCTATCTTCGGGAGTTTCTCCAGGGAAGTTTAAGATGTACAGGTGCAGGAATAATATGTGGGACATAGTGACCCCGA TTATGGTAGGTGGTCATCATATAGGCAATATCTTTTCAGGGCAGTTCTTTTTTGAGGATGAACCTCTGGACTACGGACTT TTCCGGTCTCAAGCCCGAAAATATGGCTTCAATGAAGAGGAATATATAGCAGCTCTTGATAAAGTGCCGCGCCTGAGCAG AGAGGCTGTGAATACAGGCATGGCTTTCCTTATGGGGTTTGCCAACATGCTTTCCGAGCTGAGTTTCAGCAACATCAGGC TTTCCATGGCGTTGATGGAACGCAATAACCTGGTAAATGAACTGCAGAAAAACAGGGAAGATCTGGACCGCGCCCAGGCA GTTGGAAATATCGGAAGCTGGCGTCTTGATGTGCGTAAAAATGAATTGATATGGTCTGACGAAACCCACCGTATTTTCGA CATACCAAAAGGAACTCCTCTGACATATGAGTTTTTTCTTTCAACTGTCTATTCGGACGACAGGGAATATGTCGATAGGA AATGGAAGGAGGGGCTGGGAGGGAAACCATATGACATTGAACACAGAATTGTAGTAGGCAATAAAATTAAGTGGGTACGT GAAAAAGCATATCTTGAGTTTGACAGAAACAGAGGGGTAACCGGCGGTTTCGGTATCACACAGGACATCACCGAACGCAA AAAAGTTGAAGAAGCTCTTAGGATCTCAAATATTTATAACCGGAGTTTGATTGAAGCCAGTCCTGATCCGCTTGTCACTA TCGGCCAGGACGGGAAGATAACTGATGTTAATAATTCCACTGAAACTGTTACCGGCTATTCAAGGGACGAACTCATAGGC ACGGACTTCTCAGACTATTTTACTGAGCCTGAAAGAGCCAAAAAAGGTTATCAGCATGTATTTTTGAAAGGGTTTGTAAA GGATTATCCTCTTGAGATCCAGCATAAAGACGGACGTGTAACCCAGGTTCTGTATAATGCTTCAGTTTACAGGGACGAGT CCGGAGAGGTTATAGGGGTCTTTGCTGCTGCGCGTGATGTTACGGAACTTAAAAAAGCAGAGGATGCCCTGAAGAAAGCA CATGATAATTTAGAAAAACTGGTTGAAGAGAGGACTGTCCAGCTTGAGAGTGCTTATGAATCATTGAAGGAAAATGAGAT AAGTCTCTCTGAAGCTCAAAAAATGGCACATATTGGAAACTGGGACTGGGACCTTGTAACCGGCAAAGTGCACTGGTCTG ATGAACTTTTCAACATTTTCGGGCGTGACCCTCAAAAAAGCGCTGCAAATTATGAAGAGCTTTTGAATTACATTCACCCG GATGACCGGGATTTTGTGGATGGCATTATCCGGAATAGTTTTACCGGGAAACGCTATGGAATTGATTACAGGATCATAAG GGATAACGGGGAAGAACGCACAGTCCATGCAGAAAAAGAACTCATTTTTGACCGGAATAATACCCCTGTTAGGTCCAAGG GAATCATCCAGGATATCACGGAGAGAAAGAAAGCTGAAGAAGCCCTGGAAAAAATACAGGAAACCCATATAAAAGAAATC CATCACAGAATCAAGAATAACCTGCAGGTAATCTCTTCCCTCTTAAGTCTTGAATCTGAAAAATTCAGTGATGCAAAAAT CCTTGAATCTTTCCGGGAAAGCCAGAACCGGGTAGCTTCAATGGCTCTGATTCACGAAGAGCTCTATAAAGGAAACGAAC TGGACACCCTCGACTTTGCAGATTATATCCAGAATCTGACTTCAGACCTGTTTGACTTATATAGCCTCAGGAACAGCGGT GTCAGCCTGAAGCTTGACCTTGAGAAGATCCATCTTGATATTGATACGGCAATTCCTCTTGGCATTATCGTTAACGAACT GGTATCAAATTCATTAAAACACGCTTTCCCTTCCGGAGAAGCAGGTGAAATTCACATAAGTTTCTGCAAAAAAGAGAGAT TTTCAAACTATGATATTTCATCGGGTCCCTGCTTTTATGAAAAAGACAGCTTCCATTACATACTTGCCGTAGAAGATAAC GGAAGAGGTATTCCCGAAGAGATAGATTTTACAAATTCAGATTCTCTCGGGCTCCAGCTTGTAAATATTCTTGTTGAACA GGTAGGCGGCTGTATAGATCTCAAAAGGGTTCACGGGACAAAATTCACTATCTGGTTCAGGAAATAA
Upstream 100 bases:
>100_bases AACCGCAAACAGATACTATCTACCTGGAAAATAGATAACCGGGTTCTGTTGCTGGCTGCGATAGACAGGGTGAACCCTTC AAGATCGGGGGAGATATGAA
Downstream 100 bases:
>100_bases AGAACTAACGAAAAAAGGAAATTTGATTTGCTGAGATTTTAATTTCGGAATCCTGTTGAATTCCCAAATCTAGCAATAAA TTCTTCCAGATCCGTTTATA
Product: sensory transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MKENLKNSGIDLKRVEETPDQSEQYFRQKLEDSLSPSQKVEDLELTEIINVHAIEPLMDNFYKLTNIPIGLNDLKGNVLI GVGWQDICTRFHRVHPETCKHCIASDIMLSSGVSPGKFKMYRCRNNMWDIVTPIMVGGHHIGNIFSGQFFFEDEPLDYGL FRSQARKYGFNEEEYIAALDKVPRLSREAVNTGMAFLMGFANMLSELSFSNIRLSMALMERNNLVNELQKNREDLDRAQA VGNIGSWRLDVRKNELIWSDETHRIFDIPKGTPLTYEFFLSTVYSDDREYVDRKWKEGLGGKPYDIEHRIVVGNKIKWVR EKAYLEFDRNRGVTGGFGITQDITERKKVEEALRISNIYNRSLIEASPDPLVTIGQDGKITDVNNSTETVTGYSRDELIG TDFSDYFTEPERAKKGYQHVFLKGFVKDYPLEIQHKDGRVTQVLYNASVYRDESGEVIGVFAAARDVTELKKAEDALKKA HDNLEKLVEERTVQLESAYESLKENEISLSEAQKMAHIGNWDWDLVTGKVHWSDELFNIFGRDPQKSAANYEELLNYIHP DDRDFVDGIIRNSFTGKRYGIDYRIIRDNGEERTVHAEKELIFDRNNTPVRSKGIIQDITERKKAEEALEKIQETHIKEI HHRIKNNLQVISSLLSLESEKFSDAKILESFRESQNRVASMALIHEELYKGNELDTLDFADYIQNLTSDLFDLYSLRNSG VSLKLDLEKIHLDIDTAIPLGIIVNELVSNSLKHAFPSGEAGEIHISFCKKERFSNYDISSGPCFYEKDSFHYILAVEDN GRGIPEEIDFTNSDSLGLQLVNILVEQVGGCIDLKRVHGTKFTIWFRK
Sequences:
>Translated_848_residues MKENLKNSGIDLKRVEETPDQSEQYFRQKLEDSLSPSQKVEDLELTEIINVHAIEPLMDNFYKLTNIPIGLNDLKGNVLI GVGWQDICTRFHRVHPETCKHCIASDIMLSSGVSPGKFKMYRCRNNMWDIVTPIMVGGHHIGNIFSGQFFFEDEPLDYGL FRSQARKYGFNEEEYIAALDKVPRLSREAVNTGMAFLMGFANMLSELSFSNIRLSMALMERNNLVNELQKNREDLDRAQA VGNIGSWRLDVRKNELIWSDETHRIFDIPKGTPLTYEFFLSTVYSDDREYVDRKWKEGLGGKPYDIEHRIVVGNKIKWVR EKAYLEFDRNRGVTGGFGITQDITERKKVEEALRISNIYNRSLIEASPDPLVTIGQDGKITDVNNSTETVTGYSRDELIG TDFSDYFTEPERAKKGYQHVFLKGFVKDYPLEIQHKDGRVTQVLYNASVYRDESGEVIGVFAAARDVTELKKAEDALKKA HDNLEKLVEERTVQLESAYESLKENEISLSEAQKMAHIGNWDWDLVTGKVHWSDELFNIFGRDPQKSAANYEELLNYIHP DDRDFVDGIIRNSFTGKRYGIDYRIIRDNGEERTVHAEKELIFDRNNTPVRSKGIIQDITERKKAEEALEKIQETHIKEI HHRIKNNLQVISSLLSLESEKFSDAKILESFRESQNRVASMALIHEELYKGNELDTLDFADYIQNLTSDLFDLYSLRNSG VSLKLDLEKIHLDIDTAIPLGIIVNELVSNSLKHAFPSGEAGEIHISFCKKERFSNYDISSGPCFYEKDSFHYILAVEDN GRGIPEEIDFTNSDSLGLQLVNILVEQVGGCIDLKRVHGTKFTIWFRK >Mature_848_residues MKENLKNSGIDLKRVEETPDQSEQYFRQKLEDSLSPSQKVEDLELTEIINVHAIEPLMDNFYKLTNIPIGLNDLKGNVLI GVGWQDICTRFHRVHPETCKHCIASDIMLSSGVSPGKFKMYRCRNNMWDIVTPIMVGGHHIGNIFSGQFFFEDEPLDYGL FRSQARKYGFNEEEYIAALDKVPRLSREAVNTGMAFLMGFANMLSELSFSNIRLSMALMERNNLVNELQKNREDLDRAQA VGNIGSWRLDVRKNELIWSDETHRIFDIPKGTPLTYEFFLSTVYSDDREYVDRKWKEGLGGKPYDIEHRIVVGNKIKWVR EKAYLEFDRNRGVTGGFGITQDITERKKVEEALRISNIYNRSLIEASPDPLVTIGQDGKITDVNNSTETVTGYSRDELIG TDFSDYFTEPERAKKGYQHVFLKGFVKDYPLEIQHKDGRVTQVLYNASVYRDESGEVIGVFAAARDVTELKKAEDALKKA HDNLEKLVEERTVQLESAYESLKENEISLSEAQKMAHIGNWDWDLVTGKVHWSDELFNIFGRDPQKSAANYEELLNYIHP DDRDFVDGIIRNSFTGKRYGIDYRIIRDNGEERTVHAEKELIFDRNNTPVRSKGIIQDITERKKAEEALEKIQETHIKEI HHRIKNNLQVISSLLSLESEKFSDAKILESFRESQNRVASMALIHEELYKGNELDTLDFADYIQNLTSDLFDLYSLRNSG VSLKLDLEKIHLDIDTAIPLGIIVNELVSNSLKHAFPSGEAGEIHISFCKKERFSNYDISSGPCFYEKDSFHYILAVEDN GRGIPEEIDFTNSDSLGLQLVNILVEQVGGCIDLKRVHGTKFTIWFRK
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: COG2202
COG function: function code T; FOG: PAS/PAC domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788381, Length=291, Percent_Identity=25.085910652921, Blast_Score=84, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 97380; Mature: 97380
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKENLKNSGIDLKRVEETPDQSEQYFRQKLEDSLSPSQKVEDLELTEIINVHAIEPLMDN CCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHH FYKLTNIPIGLNDLKGNVLIGVGWQDICTRFHRVHPETCKHCIASDIMLSSGVSPGKFKM HHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEE YRCRNNMWDIVTPIMVGGHHIGNIFSGQFFFEDEPLDYGLFRSQARKYGFNEEEYIAALD EECCCCCHHHHHHHHHCCCHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH KVPRLSREAVNTGMAFLMGFANMLSELSFSNIRLSMALMERNNLVNELQKNREDLDRAQA HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH VGNIGSWRLDVRKNELIWSDETHRIFDIPKGTPLTYEFFLSTVYSDDREYVDRKWKEGLG HCCCCCEEEEEECCCEEECCCCCEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCC GKPYDIEHRIVVGNKIKWVREKAYLEFDRNRGVTGGFGITQDITERKKVEEALRISNIYN CCCCCCCEEEEECCCHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC RSLIEASPDPLVTIGQDGKITDVNNSTETVTGYSRDELIGTDFSDYFTEPERAKKGYQHV CHHHCCCCCCEEEECCCCCEEECCCCCCEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHH FLKGFVKDYPLEIQHKDGRVTQVLYNASVYRDESGEVIGVFAAARDVTELKKAEDALKKA HHHHHHHCCCEEEEECCCCEEEEEEHHHEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHH HDNLEKLVEERTVQLESAYESLKENEISLSEAQKMAHIGNWDWDLVTGKVHWSDELFNIF HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHH GRDPQKSAANYEELLNYIHPDDRDFVDGIIRNSFTGKRYGIDYRIIRDNGEERTVHAEKE CCCCCHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCCCEECCEEEEECCCCCCCEEEHHHH LIFDRNNTPVRSKGIIQDITERKKAEEALEKIQETHIKEIHHRIKNNLQVISSLLSLESE HEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KFSDAKILESFRESQNRVASMALIHEELYKGNELDTLDFADYIQNLTSDLFDLYSLRNSG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC VSLKLDLEKIHLDIDTAIPLGIIVNELVSNSLKHAFPSGEAGEIHISFCKKERFSNYDIS CEEEEEHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCCCCCC SGPCFYEKDSFHYILAVEDNGRGIPEEIDFTNSDSLGLQLVNILVEQVGGCIDLKRVHGT CCCCEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCC KFTIWFRK EEEEEEEC >Mature Secondary Structure MKENLKNSGIDLKRVEETPDQSEQYFRQKLEDSLSPSQKVEDLELTEIINVHAIEPLMDN CCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHH FYKLTNIPIGLNDLKGNVLIGVGWQDICTRFHRVHPETCKHCIASDIMLSSGVSPGKFKM HHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEE YRCRNNMWDIVTPIMVGGHHIGNIFSGQFFFEDEPLDYGLFRSQARKYGFNEEEYIAALD EECCCCCHHHHHHHHHCCCHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH KVPRLSREAVNTGMAFLMGFANMLSELSFSNIRLSMALMERNNLVNELQKNREDLDRAQA HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH VGNIGSWRLDVRKNELIWSDETHRIFDIPKGTPLTYEFFLSTVYSDDREYVDRKWKEGLG HCCCCCEEEEEECCCEEECCCCCEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCC GKPYDIEHRIVVGNKIKWVREKAYLEFDRNRGVTGGFGITQDITERKKVEEALRISNIYN CCCCCCCEEEEECCCHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC RSLIEASPDPLVTIGQDGKITDVNNSTETVTGYSRDELIGTDFSDYFTEPERAKKGYQHV CHHHCCCCCCEEEECCCCCEEECCCCCCEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHH FLKGFVKDYPLEIQHKDGRVTQVLYNASVYRDESGEVIGVFAAARDVTELKKAEDALKKA HHHHHHHCCCEEEEECCCCEEEEEEHHHEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHH HDNLEKLVEERTVQLESAYESLKENEISLSEAQKMAHIGNWDWDLVTGKVHWSDELFNIF HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHH GRDPQKSAANYEELLNYIHPDDRDFVDGIIRNSFTGKRYGIDYRIIRDNGEERTVHAEKE CCCCCHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCCCEECCEEEEECCCCCCCEEEHHHH LIFDRNNTPVRSKGIIQDITERKKAEEALEKIQETHIKEIHHRIKNNLQVISSLLSLESE HEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KFSDAKILESFRESQNRVASMALIHEELYKGNELDTLDFADYIQNLTSDLFDLYSLRNSG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC VSLKLDLEKIHLDIDTAIPLGIIVNELVSNSLKHAFPSGEAGEIHISFCKKERFSNYDIS CEEEEEHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCCCCCC SGPCFYEKDSFHYILAVEDNGRGIPEEIDFTNSDSLGLQLVNILVEQVGGCIDLKRVHGT CCCCEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCC KFTIWFRK EEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]