| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227752
Identifier: 21227752
GI number: 21227752
Start: 1970267
End: 1971058
Strand: Direct
Name: 21227752
Synonym: MM_1650
Alternate gene names: NA
Gene position: 1970267-1971058 (Clockwise)
Preceding gene: 21227751
Following gene: 21227753
Centisome position: 48.1
GC content: 43.56
Gene sequence:
>792_bases ATGAGTATGGAACTGCAGTTAATAGATACCATTTTTTTTTCGGACAAAAGGAAAAATTTGCTTCTGCTCCTGAAGAACGG GCCAAAAACGATTGAAGAGATAAAGACCGAGCTTGAAGTCAGTTCCAGCCCTATTATGGCTCAGATCCGTATACTTCTTA AAGATGGGCTGCTGGTGCAGAACGAAGATAGTTACGAACTCTCTGTAAAAGGGAAACTTATAGTCCCCAAAATGGAGCCG CTTCTCTCTACTTTCCAGGTATTTGATGAGAACCACGATTACTGGGCAAGGCAGAACCTGCGTACTCTTCCTGCTCACCT GCTGGACAGAATCGGGGAACTGGGCACCTGTAGAGAACTTATACCCGAAAGGACGCATATCTTCGATTACCCTCCGGAAA TTATGGACCCACTTTACAAGTCCAGAATAGTAATGGAAATATCTTCGTTTTTCCGTCCGGGATATCCAGGCCTTTATCTG GATCTCGCGCAAAAAGGGATTGAGGTATCTCTTGTCCTTGAAAGGCCAATATACAGGAAGCTGGTCCGTGACTACAGGAA AGGTGTAGAAGAGTTCCTGAATATGGAGAACACTTCCCTTTTTGTTTGTGACGACAGGATTGATCTTGCTTCCAGCATTA TTACCGACCGGTTCATTTCTTTATCCATGATCTCAAAAGACGGGAGATATTATAACCACGAGATGGTAAGCTTTGAAAAA AGCGCTCTTGAATGGGGCAGGGAACTTTTCGACTACTATAAGGACATGTCTGAGCAGGTTATAAAGATTTGA
Upstream 100 bases:
>100_bases GCGTGTCAACAGCTTTAATACATGTTTGGAGATTTAAATCCCGAATTAATCATCTTATTACATTGATATCAAACTCCTTT CCGGAGGGAGGCTAAATAGA
Downstream 100 bases:
>100_bases TCCGGTATTGGATTTTTAAAATCCAATACTTATTCAATAAGAATTCAAAATGGGTTTTACACTAATTTAATAAGGAAGGA TTCTACACTAATTCACTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSMELQLIDTIFFSDKRKNLLLLLKNGPKTIEEIKTELEVSSSPIMAQIRILLKDGLLVQNEDSYELSVKGKLIVPKMEP LLSTFQVFDENHDYWARQNLRTLPAHLLDRIGELGTCRELIPERTHIFDYPPEIMDPLYKSRIVMEISSFFRPGYPGLYL DLAQKGIEVSLVLERPIYRKLVRDYRKGVEEFLNMENTSLFVCDDRIDLASSIITDRFISLSMISKDGRYYNHEMVSFEK SALEWGRELFDYYKDMSEQVIKI
Sequences:
>Translated_263_residues MSMELQLIDTIFFSDKRKNLLLLLKNGPKTIEEIKTELEVSSSPIMAQIRILLKDGLLVQNEDSYELSVKGKLIVPKMEP LLSTFQVFDENHDYWARQNLRTLPAHLLDRIGELGTCRELIPERTHIFDYPPEIMDPLYKSRIVMEISSFFRPGYPGLYL DLAQKGIEVSLVLERPIYRKLVRDYRKGVEEFLNMENTSLFVCDDRIDLASSIITDRFISLSMISKDGRYYNHEMVSFEK SALEWGRELFDYYKDMSEQVIKI >Mature_262_residues SMELQLIDTIFFSDKRKNLLLLLKNGPKTIEEIKTELEVSSSPIMAQIRILLKDGLLVQNEDSYELSVKGKLIVPKMEPL LSTFQVFDENHDYWARQNLRTLPAHLLDRIGELGTCRELIPERTHIFDYPPEIMDPLYKSRIVMEISSFFRPGYPGLYLD LAQKGIEVSLVLERPIYRKLVRDYRKGVEEFLNMENTSLFVCDDRIDLASSIITDRFISLSMISKDGRYYNHEMVSFEKS ALEWGRELFDYYKDMSEQVIKI
Specific function: Unknown
COG id: COG4742
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30806; Mature: 30675
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMELQLIDTIFFSDKRKNLLLLLKNGPKTIEEIKTELEVSSSPIMAQIRILLKDGLLVQ CCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEE NEDSYELSVKGKLIVPKMEPLLSTFQVFDENHDYWARQNLRTLPAHLLDRIGELGTCREL CCCCEEEEECCEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH IPERTHIFDYPPEIMDPLYKSRIVMEISSFFRPGYPGLYLDLAQKGIEVSLVLERPIYRK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEEECCHHHHH LVRDYRKGVEEFLNMENTSLFVCDDRIDLASSIITDRFISLSMISKDGRYYNHEMVSFEK HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHECCCCCEECHHHHHHHH SALEWGRELFDYYKDMSEQVIKI HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SMELQLIDTIFFSDKRKNLLLLLKNGPKTIEEIKTELEVSSSPIMAQIRILLKDGLLVQ CCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEE NEDSYELSVKGKLIVPKMEPLLSTFQVFDENHDYWARQNLRTLPAHLLDRIGELGTCREL CCCCEEEEECCEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH IPERTHIFDYPPEIMDPLYKSRIVMEISSFFRPGYPGLYLDLAQKGIEVSLVLERPIYRK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEEECCHHHHH LVRDYRKGVEEFLNMENTSLFVCDDRIDLASSIITDRFISLSMISKDGRYYNHEMVSFEK HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHECCCCCEECHHHHHHHH SALEWGRELFDYYKDMSEQVIKI HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA