| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21227677
Identifier: 21227677
GI number: 21227677
Start: 1876669
End: 1877658
Strand: Direct
Name: 21227677
Synonym: MM_1575
Alternate gene names: NA
Gene position: 1876669-1877658 (Clockwise)
Preceding gene: 21227675
Following gene: 21227688
Centisome position: 45.81
GC content: 40.51
Gene sequence:
>990_bases ATGATCAAAAGAAGGAATACTGGCAAATGGTTAATGCTTATAATTTCTGCTTTTATTTTATTATGCAGTTTCGCAGGTGC AGATGACAGTGAATTTAACGATTCCGAATCAGATGAGCCCCCAGATTCTATAAAGAAATTTGCAAATAACCCCTTGTTCA TAGCATACAGGGGAACTATACCAGAAACTGTCAATCAGGAGTGGAAAAATTCAATTACAGATTGCTGGCTAAATCTTAAC AAAATAGGGCCTTCATATTCCGAATTTGACCGCTCTATATCAGGCGTTGCTGCCAGTGATGTAATTATAGTGGAATTGGG ATCTGCCTATAAAGGAGAAGTAGATGACTCAAGAATTGACGCGATGTATTTGAAAATTGAGGAATATTGCGAAGAGCAGG AGGGAATAAGTGATATCCCTGTGATTTTTATGTGGGCACAGGACGAGGAGGATCTCCCGCTACCTGACTACGGACCTCAG ATTTTCGAGGAAGTTAAAAATGAGCCCGGGTTCATAGCCACTCGGGGAACAATGCCTGTAGTTACAGATTCCAGTGGAAA AGTGGAGTGGGAAGAGAAAGCACGGGATTGTATCCATAGTTTCAGAACTGAACTTCGGCCCTACATGAAGTCATCTGGTG GACCATTGACTGGGTATGGCTATAATTATAGGGGATATATATCCGTAGGACTTGATCCAGAATCTCCAGAAAGTGTTAAT GATTCTATAATTGATGAAATTTATCTAATAATCGAGGAACACTGTAAACAGGAAGGTATAAGTGAGGTACCAGTAGTGTT CGAGTGGATGGGAGTGCCAGTTGAAGACATAGCAGTAGTTGATGGACCATATGTGGATGAAGCTGATAACACCAACTTCT CAGGCAATGAAGAGGAGATTGCTGGTAACGAAACAACCAATCAAATACCTGGCTTTACTTCGGTAATGTTCATTTTGGGA CTTTTATCATTGCTAATAATCAAGCGTTAA
Upstream 100 bases:
>100_bases ATCATACTGTATTTCACTAATGCGCAGATGCTTGATTTTGAGCTCAGTTTAATACAATAATAAGACTGGAGTTCTAAACT AACTGTTAAGGTCTGATTAA
Downstream 100 bases:
>100_bases TAACATTCTTTTTTAAGCTCTTTTTGCCAGTTTCTTTAAATTTTTCTGGCTTTCTTCCCCTTTTTTTCAACATAGTTATT TTTCTTCTCGTTTTCTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MIKRRNTGKWLMLIISAFILLCSFAGADDSEFNDSESDEPPDSIKKFANNPLFIAYRGTIPETVNQEWKNSITDCWLNLN KIGPSYSEFDRSISGVAASDVIIVELGSAYKGEVDDSRIDAMYLKIEEYCEEQEGISDIPVIFMWAQDEEDLPLPDYGPQ IFEEVKNEPGFIATRGTMPVVTDSSGKVEWEEKARDCIHSFRTELRPYMKSSGGPLTGYGYNYRGYISVGLDPESPESVN DSIIDEIYLIIEEHCKQEGISEVPVVFEWMGVPVEDIAVVDGPYVDEADNTNFSGNEEEIAGNETTNQIPGFTSVMFILG LLSLLIIKR
Sequences:
>Translated_329_residues MIKRRNTGKWLMLIISAFILLCSFAGADDSEFNDSESDEPPDSIKKFANNPLFIAYRGTIPETVNQEWKNSITDCWLNLN KIGPSYSEFDRSISGVAASDVIIVELGSAYKGEVDDSRIDAMYLKIEEYCEEQEGISDIPVIFMWAQDEEDLPLPDYGPQ IFEEVKNEPGFIATRGTMPVVTDSSGKVEWEEKARDCIHSFRTELRPYMKSSGGPLTGYGYNYRGYISVGLDPESPESVN DSIIDEIYLIIEEHCKQEGISEVPVVFEWMGVPVEDIAVVDGPYVDEADNTNFSGNEEEIAGNETTNQIPGFTSVMFILG LLSLLIIKR >Mature_329_residues MIKRRNTGKWLMLIISAFILLCSFAGADDSEFNDSESDEPPDSIKKFANNPLFIAYRGTIPETVNQEWKNSITDCWLNLN KIGPSYSEFDRSISGVAASDVIIVELGSAYKGEVDDSRIDAMYLKIEEYCEEQEGISDIPVIFMWAQDEEDLPLPDYGPQ IFEEVKNEPGFIATRGTMPVVTDSSGKVEWEEKARDCIHSFRTELRPYMKSSGGPLTGYGYNYRGYISVGLDPESPESVN DSIIDEIYLIIEEHCKQEGISEVPVVFEWMGVPVEDIAVVDGPYVDEADNTNFSGNEEEIAGNETTNQIPGFTSVMFILG LLSLLIIKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36844; Mature: 36844
Theoretical pI: Translated: 3.94; Mature: 3.94
Prosite motif: PS00067 3HCDH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKRRNTGKWLMLIISAFILLCSFAGADDSEFNDSESDEPPDSIKKFANNPLFIAYRGTI CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC PETVNQEWKNSITDCWLNLNKIGPSYSEFDRSISGVAASDVIIVELGSAYKGEVDDSRID CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHH AMYLKIEEYCEEQEGISDIPVIFMWAQDEEDLPLPDYGPQIFEEVKNEPGFIATRGTMPV HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCEE VTDSSGKVEWEEKARDCIHSFRTELRPYMKSSGGPLTGYGYNYRGYISVGLDPESPESVN EECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCC DSIIDEIYLIIEEHCKQEGISEVPVVFEWMGVPVEDIAVVDGPYVDEADNTNFSGNEEEI HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCHHHC AGNETTNQIPGFTSVMFILGLLSLLIIKR CCCCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIKRRNTGKWLMLIISAFILLCSFAGADDSEFNDSESDEPPDSIKKFANNPLFIAYRGTI CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC PETVNQEWKNSITDCWLNLNKIGPSYSEFDRSISGVAASDVIIVELGSAYKGEVDDSRID CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHH AMYLKIEEYCEEQEGISDIPVIFMWAQDEEDLPLPDYGPQIFEEVKNEPGFIATRGTMPV HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCEE VTDSSGKVEWEEKARDCIHSFRTELRPYMKSSGGPLTGYGYNYRGYISVGLDPESPESVN EECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCC DSIIDEIYLIIEEHCKQEGISEVPVVFEWMGVPVEDIAVVDGPYVDEADNTNFSGNEEEI HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCHHHC AGNETTNQIPGFTSVMFILGLLSLLIIKR CCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA