| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227661
Identifier: 21227661
GI number: 21227661
Start: 1858409
End: 1859275
Strand: Direct
Name: 21227661
Synonym: MM_1559
Alternate gene names: NA
Gene position: 1858409-1859275 (Clockwise)
Preceding gene: 21227660
Following gene: 21227662
Centisome position: 45.37
GC content: 42.68
Gene sequence:
>867_bases GTGAAAATGAATACAAAAAATATGTTTATACTCCTTGCCCTGATGGTGATCTTCATATCGGGCTGTGTTGACCAGAAAAA AGAGATCACTATTGATGAGCCTGGCAACATCTCCAGTTATGAATTTGATGTTTTTCTGGAAGAGTGGGATAACAACACTC CAGTAAATACCACCACATACTATATTCTGGAAAACAAAGTTGAAGTTCAGGCTGTCCATCTGGTTATAAATAGCAGCAAG CTTGAAATTTTCCCTCCGGATTCTCTTGGAGGAGGCTCTGAGAAGGAACCCATTAAAAACTTTGTACTGCTGGTAGAACC TGCGAACGAAACAGTTGCGGGACCGGAAACTTTTTCGAGGCTTGCAAACAGCATCAACGTTACATACCTGAATTACACTC TCACGCAGGACGTTTCCAGGGGCATGAAGGTAGTAAATCTCGAATTTGAGGAAAACGTTACAGGTTTTATTGCATATACT CTTGATGCGCCCGGAACCCAGAGCTTTACCTTTATGAAACCTGATTCCGAGTTTATACGTGTGATTCTCCCTGAGGGCTA TGTTACAGGCAACAGGGTTTTCGGGATAGCAAGACCTGCACCTTCCAGCACAGGCTTTGATGAGAAAGGAAGACATACTC TCCTGTGGGTTTATTCTGAAATGGGAGAACGTGAAGAAGCTATTCAGGTTAAATATTATACTGAATCCGCGCCCATGTAT TTCTTTGCCGCAATCGTGGCTCTGCTTTTCGGGGTTGTGATGGTGCTTATGCGTTATTCCAGAAGCAGAAAGGAACTGGA GAGCGTCAGGGAAATCTTCGAACTCGAAAAAGAATACGAAAAGAAAGGACAGAGAAAAAAGAAATAA
Upstream 100 bases:
>100_bases GTAAAGATTGACCTGTTATGATCCTGCAGCTTGTTCTAAACCTTAATAAATTGCTGCCGGCTAAAAAGAGATCGCTTCGA GCTCAAGGGAGAATTCTTCC
Downstream 100 bases:
>100_bases CTTTAAGGTAAGGATTTCCTTTATTATTTCTTTTTATTATTTTTTATTACTTTTTATTATTTTTTATTATTTTTTATTAT TTTTTATTATTTTTTATAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MKMNTKNMFILLALMVIFISGCVDQKKEITIDEPGNISSYEFDVFLEEWDNNTPVNTTTYYILENKVEVQAVHLVINSSK LEIFPPDSLGGGSEKEPIKNFVLLVEPANETVAGPETFSRLANSINVTYLNYTLTQDVSRGMKVVNLEFEENVTGFIAYT LDAPGTQSFTFMKPDSEFIRVILPEGYVTGNRVFGIARPAPSSTGFDEKGRHTLLWVYSEMGEREEAIQVKYYTESAPMY FFAAIVALLFGVVMVLMRYSRSRKELESVREIFELEKEYEKKGQRKKK
Sequences:
>Translated_288_residues MKMNTKNMFILLALMVIFISGCVDQKKEITIDEPGNISSYEFDVFLEEWDNNTPVNTTTYYILENKVEVQAVHLVINSSK LEIFPPDSLGGGSEKEPIKNFVLLVEPANETVAGPETFSRLANSINVTYLNYTLTQDVSRGMKVVNLEFEENVTGFIAYT LDAPGTQSFTFMKPDSEFIRVILPEGYVTGNRVFGIARPAPSSTGFDEKGRHTLLWVYSEMGEREEAIQVKYYTESAPMY FFAAIVALLFGVVMVLMRYSRSRKELESVREIFELEKEYEKKGQRKKK >Mature_288_residues MKMNTKNMFILLALMVIFISGCVDQKKEITIDEPGNISSYEFDVFLEEWDNNTPVNTTTYYILENKVEVQAVHLVINSSK LEIFPPDSLGGGSEKEPIKNFVLLVEPANETVAGPETFSRLANSINVTYLNYTLTQDVSRGMKVVNLEFEENVTGFIAYT LDAPGTQSFTFMKPDSEFIRVILPEGYVTGNRVFGIARPAPSSTGFDEKGRHTLLWVYSEMGEREEAIQVKYYTESAPMY FFAAIVALLFGVVMVLMRYSRSRKELESVREIFELEKEYEKKGQRKKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32813; Mature: 32813
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMNTKNMFILLALMVIFISGCVDQKKEITIDEPGNISSYEFDVFLEEWDNNTPVNTTTY CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEE YILENKVEVQAVHLVINSSKLEIFPPDSLGGGSEKEPIKNFVLLVEPANETVAGPETFSR EEEECCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHH LANSINVTYLNYTLTQDVSRGMKVVNLEFEENVTGFIAYTLDAPGTQSFTFMKPDSEFIR HHCCEEEEEEEEEEHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEECCCHHEEE VILPEGYVTGNRVFGIARPAPSSTGFDEKGRHTLLWVYSEMGEREEAIQVKYYTESAPMY EEECCCEEECCEEEEEECCCCCCCCCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCHH FFAAIVALLFGVVMVLMRYSRSRKELESVREIFELEKEYEKKGQRKKK HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKMNTKNMFILLALMVIFISGCVDQKKEITIDEPGNISSYEFDVFLEEWDNNTPVNTTTY CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEE YILENKVEVQAVHLVINSSKLEIFPPDSLGGGSEKEPIKNFVLLVEPANETVAGPETFSR EEEECCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHH LANSINVTYLNYTLTQDVSRGMKVVNLEFEENVTGFIAYTLDAPGTQSFTFMKPDSEFIR HHCCEEEEEEEEEEHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEECCCHHEEE VILPEGYVTGNRVFGIARPAPSSTGFDEKGRHTLLWVYSEMGEREEAIQVKYYTESAPMY EEECCCEEECCEEEEEECCCCCCCCCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCHH FFAAIVALLFGVVMVLMRYSRSRKELESVREIFELEKEYEKKGQRKKK HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA