| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227517
Identifier: 21227517
GI number: 21227517
Start: 1697422
End: 1697796
Strand: Direct
Name: 21227517
Synonym: MM_1415
Alternate gene names: NA
Gene position: 1697422-1697796 (Clockwise)
Preceding gene: 21227516
Following gene: 161485676
Centisome position: 41.44
GC content: 42.4
Gene sequence:
>375_bases ATGAGTTGTATTGAACAGATGAAATATACAATCCTCCTGGACAGGATAAGCTTCAAAGAAGCAAGAGAGTATATTGAGAA AAACTCGGATGAAGTCTACTATGTGTCCCCGGGCTACAAGATATTCAAGGACTACTACATAATAGGAGTACCGCCCATTG CTATGGGAGCGAAGGGAAATGCCCTGATTTTTCCTTATACCAAACCCTGTCATGGATCATTTGTCCTGAGCATAGAGAAC GATGACAGCATAAAGGAGATCAATCGGCTCAGAGATGCAGAAAAGGGAAAGGGAACAGGCCCAATAAAAAAGGCAAAGAC TTCTGAAAGCTCAGGCGCATCCTCGGCCAGCTATCTTAATATGTGGAAAAAATAA
Upstream 100 bases:
>100_bases AAACTATAGAGTTCGATTGTGAGAAAATAGTTACACAGGATGTTCACAATCCTGTTCGACTTAAAAACAAACTGGATAAA ATAATGGGGGAAATAGCCAG
Downstream 100 bases:
>100_bases GTTTAAAATAACCGCAATAATAAGAAGCCGTTCTTGTAAGAAGCCGTCCAGAAGTCACTCCTTTCCGGATTAAAAAATTG GGCTATCACAGCAGAGAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MSCIEQMKYTILLDRISFKEAREYIEKNSDEVYYVSPGYKIFKDYYIIGVPPIAMGAKGNALIFPYTKPCHGSFVLSIEN DDSIKEINRLRDAEKGKGTGPIKKAKTSESSGASSASYLNMWKK
Sequences:
>Translated_124_residues MSCIEQMKYTILLDRISFKEAREYIEKNSDEVYYVSPGYKIFKDYYIIGVPPIAMGAKGNALIFPYTKPCHGSFVLSIEN DDSIKEINRLRDAEKGKGTGPIKKAKTSESSGASSASYLNMWKK >Mature_123_residues SCIEQMKYTILLDRISFKEAREYIEKNSDEVYYVSPGYKIFKDYYIIGVPPIAMGAKGNALIFPYTKPCHGSFVLSIEND DSIKEINRLRDAEKGKGTGPIKKAKTSESSGASSASYLNMWKK
Specific function: Unknown
COG id: COG4033
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012031 - ProDom: PD028584 [H]
Pfam domain/function: PF08979 DUF1894 [H]
EC number: NA
Molecular weight: Translated: 13976; Mature: 13845
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCIEQMKYTILLDRISFKEAREYIEKNSDEVYYVSPGYKIFKDYYIIGVPPIAMGAKGN CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCEEEECEEEEECCCEEECCCCC ALIFPYTKPCHGSFVLSIENDDSIKEINRLRDAEKGKGTGPIKKAKTSESSGASSASYLN EEEECCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH MWKK HCCC >Mature Secondary Structure SCIEQMKYTILLDRISFKEAREYIEKNSDEVYYVSPGYKIFKDYYIIGVPPIAMGAKGN CHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCEEEECEEEEECCCEEECCCCC ALIFPYTKPCHGSFVLSIENDDSIKEINRLRDAEKGKGTGPIKKAKTSESSGASSASYLN EEEECCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH MWKK HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]