| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21227439
Identifier: 21227439
GI number: 21227439
Start: 1595244
End: 1596833
Strand: Reverse
Name: 21227439
Synonym: MM_1337
Alternate gene names: NA
Gene position: 1596833-1595244 (Counterclockwise)
Preceding gene: 21227440
Following gene: 21227429
Centisome position: 38.98
GC content: 48.68
Gene sequence:
>1590_bases ATGGTAGCTCTCGCATCCAGCGCATCTGCTGCCGCACCGGAGCCATCTTATGGTACAGCGGTTGTAGACGGAAAATATAT TGAATGGGATCTGGGTGCTGACCATTTTGCTGATATGCATGAGGCGTATAACGCAAACAAAGACGTCCTTTCAAAGCTTT ATCTGCGTTATAACTGCAGCGCAAAAGTAATGTATGTTCTTGTGTTGCGTGTACCACCTTATGAGGTTCAACCCACTGCT GATGATGCATGGGTTAGAATTGATAGTGCAGAAGGGGCGCCGGTAGTTTCAGGAACAACTGGAAATGATGGAATACCACC TGATTTTGAGTGGGTCAAAAACGACACTGGAACTATAATTGGTTACGAAGCATCGTTCCCTCTTGAACCTGGTACTCACA CAATTGGAGCACATATACAAATACAACCTGGCAGGACATCTGGAACAATAGATAAGCAAATTCCTCTTGTAATAAATTGT CAGCAACGCGAGGAACTCACGGTCAGCAAAACTGCCATCACCTCTTACACCCGTACCCACAACTGGGACATCACTAAGTC TGTTACCACCAAAAATGGATACACGCACGAAGGATTCCCAAAAATCTGGCTCTACATAGATGGACGTGGCAATGAAACAG CTACGTGGACGGTGGACGTGAAGCATAAAGGTTGTGAAGACAGTGACTTCGACGTTTCAGGTGTAATCACTATTGAAAAC ACTGGAGACCTACCCGCAAATATCACCGACATTAGTGATGTTCTCGGTGAAACTGGAATTCAGGTTACCGTTTCCGGAAT TGAACTTCCATACACGCTGCCTGCCGGGGAAACCCTAGAGCTTAGATACAGCCAGGCCGTCGATAGTATGATAGATGGCT CCAATGATGTGACGGTAACGACCGAGAGGGACAATTATGACGCGAGCGCTGAAATAGTCTGGAGTGAAACACCCACTACA GAGAACTACAAGACCATCAATGTTGTCGACTTTAGCGACCTCTTTGGCGAACAAACTCTCGGCACAGTAACTGCCCCAGA AAACGCGCAGTTTACCTACTCCAAGGACTTTGCATGGGAAGACTACGGCAAGGACGCAGGTGGCGATTATGTCTACAACA ATGAGGCAACCATAGTTGAGACGGGAGATTCTGACGATGCCACACTAAAGGTCAATGTCCAGAGCTACATGTATGAAACG GCCTACGCCAAGGGCGATGGAGCAACCTGTTTCATCCCCACCTTCAAAAATTGGGGCTGGACCAACCTGATTTCTCCCGG CACCTACGAGATGGACCTTTGGGCCGGTGCCGCACAGTGTGATACCTCTAAGGGAACCCTGGTCGGCTCGGTGACTGTGA CGTACGGCAGCGATGGCTATGTAACTGCGGACTATAACGTGGGCACGCCCTACATCCTAGAAGAAACCCATGTGTATGCC GGTTACGAAATGTTCCCGATGGACAAAAAAGGTAACCCAACGGTTGCACCAGGAGCATACTCCAACGCCAGTCCGTTTGA CGGTCGAGATGTCTATGTCATCGCACACGCGGTGGTAGGAATTCCTGACCCGAATTTTGGTCCTGAGTGA
Upstream 100 bases:
>100_bases AGAAAAACCTGGAAGTGAATAAATGAAAAATCTAAAAAGTGAAATTCTGGAAACGAATATAACAAAGATGGTCTTGCTTT CCATAGCTTTTACAATAGCA
Downstream 100 bases:
>100_bases ATGAAGACGAAAAAACCCGGGATGCATCCCGCTCCCGGGAATAGTTTTTTTGAGAAGGTATCCAATAATAACTATGGTTT TTTGAATGAATTCAAATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 529; Mature: 529
Protein sequence:
>529_residues MVALASSASAAAPEPSYGTAVVDGKYIEWDLGADHFADMHEAYNANKDVLSKLYLRYNCSAKVMYVLVLRVPPYEVQPTA DDAWVRIDSAEGAPVVSGTTGNDGIPPDFEWVKNDTGTIIGYEASFPLEPGTHTIGAHIQIQPGRTSGTIDKQIPLVINC QQREELTVSKTAITSYTRTHNWDITKSVTTKNGYTHEGFPKIWLYIDGRGNETATWTVDVKHKGCEDSDFDVSGVITIEN TGDLPANITDISDVLGETGIQVTVSGIELPYTLPAGETLELRYSQAVDSMIDGSNDVTVTTERDNYDASAEIVWSETPTT ENYKTINVVDFSDLFGEQTLGTVTAPENAQFTYSKDFAWEDYGKDAGGDYVYNNEATIVETGDSDDATLKVNVQSYMYET AYAKGDGATCFIPTFKNWGWTNLISPGTYEMDLWAGAAQCDTSKGTLVGSVTVTYGSDGYVTADYNVGTPYILEETHVYA GYEMFPMDKKGNPTVAPGAYSNASPFDGRDVYVIAHAVVGIPDPNFGPE
Sequences:
>Translated_529_residues MVALASSASAAAPEPSYGTAVVDGKYIEWDLGADHFADMHEAYNANKDVLSKLYLRYNCSAKVMYVLVLRVPPYEVQPTA DDAWVRIDSAEGAPVVSGTTGNDGIPPDFEWVKNDTGTIIGYEASFPLEPGTHTIGAHIQIQPGRTSGTIDKQIPLVINC QQREELTVSKTAITSYTRTHNWDITKSVTTKNGYTHEGFPKIWLYIDGRGNETATWTVDVKHKGCEDSDFDVSGVITIEN TGDLPANITDISDVLGETGIQVTVSGIELPYTLPAGETLELRYSQAVDSMIDGSNDVTVTTERDNYDASAEIVWSETPTT ENYKTINVVDFSDLFGEQTLGTVTAPENAQFTYSKDFAWEDYGKDAGGDYVYNNEATIVETGDSDDATLKVNVQSYMYET AYAKGDGATCFIPTFKNWGWTNLISPGTYEMDLWAGAAQCDTSKGTLVGSVTVTYGSDGYVTADYNVGTPYILEETHVYA GYEMFPMDKKGNPTVAPGAYSNASPFDGRDVYVIAHAVVGIPDPNFGPE >Mature_529_residues MVALASSASAAAPEPSYGTAVVDGKYIEWDLGADHFADMHEAYNANKDVLSKLYLRYNCSAKVMYVLVLRVPPYEVQPTA DDAWVRIDSAEGAPVVSGTTGNDGIPPDFEWVKNDTGTIIGYEASFPLEPGTHTIGAHIQIQPGRTSGTIDKQIPLVINC QQREELTVSKTAITSYTRTHNWDITKSVTTKNGYTHEGFPKIWLYIDGRGNETATWTVDVKHKGCEDSDFDVSGVITIEN TGDLPANITDISDVLGETGIQVTVSGIELPYTLPAGETLELRYSQAVDSMIDGSNDVTVTTERDNYDASAEIVWSETPTT ENYKTINVVDFSDLFGEQTLGTVTAPENAQFTYSKDFAWEDYGKDAGGDYVYNNEATIVETGDSDDATLKVNVQSYMYET AYAKGDGATCFIPTFKNWGWTNLISPGTYEMDLWAGAAQCDTSKGTLVGSVTVTYGSDGYVTADYNVGTPYILEETHVYA GYEMFPMDKKGNPTVAPGAYSNASPFDGRDVYVIAHAVVGIPDPNFGPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57502; Mature: 57502
Theoretical pI: Translated: 4.03; Mature: 4.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVALASSASAAAPEPSYGTAVVDGKYIEWDLGADHFADMHEAYNANKDVLSKLYLRYNCS CEEEECCCCCCCCCCCCCEEEECCEEEEEECCCHHHHHHHHHHCCCHHHHHHEEEEECCC AKVMYVLVLRVPPYEVQPTADDAWVRIDSAEGAPVVSGTTGNDGIPPDFEWVKNDTGTII CEEEEEEEEECCCCEECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHEECCCCEEE GYEASFPLEPGTHTIGAHIQIQPGRTSGTIDKQIPLVINCQQREELTVSKTAITSYTRTH EEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEC NWDITKSVTTKNGYTHEGFPKIWLYIDGRGNETATWTVDVKHKGCEDSDFDVSGVITIEN CCEEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEEEECC TGDLPANITDISDVLGETGIQVTVSGIELPYTLPAGETLELRYSQAVDSMIDGSNDVTVT CCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEHHHHHHHHHCCCCCEEEE TERDNYDASAEIVWSETPTTENYKTINVVDFSDLFGEQTLGTVTAPENAQFTYSKDFAWE EECCCCCCCEEEEECCCCCCCCEEEEEEEEHHHHCCCCCCCEEECCCCCEEEEECCCCHH DYGKDAGGDYVYNNEATIVETGDSDDATLKVNVQSYMYETAYAKGDGATCFIPTFKNWGW HCCCCCCCCEEECCCEEEEECCCCCCCEEEEEHHHEEEEEEEECCCCCEEEEECCCCCCC TNLISPGTYEMDLWAGAAQCDTSKGTLVGSVTVTYGSDGYVTADYNVGTPYILEETHVYA CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEECCEEEE GYEMFPMDKKGNPTVAPGAYSNASPFDGRDVYVIAHAVVGIPDPNFGPE CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCC >Mature Secondary Structure MVALASSASAAAPEPSYGTAVVDGKYIEWDLGADHFADMHEAYNANKDVLSKLYLRYNCS CEEEECCCCCCCCCCCCCEEEECCEEEEEECCCHHHHHHHHHHCCCHHHHHHEEEEECCC AKVMYVLVLRVPPYEVQPTADDAWVRIDSAEGAPVVSGTTGNDGIPPDFEWVKNDTGTII CEEEEEEEEECCCCEECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHEECCCCEEE GYEASFPLEPGTHTIGAHIQIQPGRTSGTIDKQIPLVINCQQREELTVSKTAITSYTRTH EEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEC NWDITKSVTTKNGYTHEGFPKIWLYIDGRGNETATWTVDVKHKGCEDSDFDVSGVITIEN CCEEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEEEECC TGDLPANITDISDVLGETGIQVTVSGIELPYTLPAGETLELRYSQAVDSMIDGSNDVTVT CCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEHHHHHHHHHCCCCCEEEE TERDNYDASAEIVWSETPTTENYKTINVVDFSDLFGEQTLGTVTAPENAQFTYSKDFAWE EECCCCCCCEEEEECCCCCCCCEEEEEEEEHHHHCCCCCCCEEECCCCCEEEEECCCCHH DYGKDAGGDYVYNNEATIVETGDSDDATLKVNVQSYMYETAYAKGDGATCFIPTFKNWGW HCCCCCCCCEEECCCEEEEECCCCCCCEEEEEHHHEEEEEEEECCCCCEEEEECCCCCCC TNLISPGTYEMDLWAGAAQCDTSKGTLVGSVTVTYGSDGYVTADYNVGTPYILEETHVYA CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEECCEEEE GYEMFPMDKKGNPTVAPGAYSNASPFDGRDVYVIAHAVVGIPDPNFGPE CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA