| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is cheC [H]
Identifier: 21227425
GI number: 21227425
Start: 1577463
End: 1578101
Strand: Reverse
Name: cheC [H]
Synonym: MM_1323
Alternate gene names: 21227425
Gene position: 1578101-1577463 (Counterclockwise)
Preceding gene: 21227426
Following gene: 21227424
Centisome position: 38.52
GC content: 35.99
Gene sequence:
>639_bases ATGGAAGAGATAACAAGTTTAAGCGAATTCGAGTATGGAGCGCTGAAAGAAATAGGAAATATAGGTATAGGAAATTCGGC AGTTTCTCTTTCGAGGCTCGTAAACAGTCTTGTATGTACAAAGGTTATAGATACGGAATTGGGATTAATCGAAGACATAC CGAAAATAGCAGGTTTTTCAGAATCCCCGGTTATGGGCACATTGATACGTATAAAAGAGGACCTCAATGGATATATCCTT GTTTTTTTCCCAGAAACAAGTGCAGAGAGCCTCTATATAAGCCTTTCAGGCGAGGAAATCGAAAAAAATCTTACAGATCC GGTAAAAAGGTCTTTAAAAATATCTTTAATTGAGGAAGTTAGCCATATCCTGGCAGGAACCTATGTAACTTCTCTCGCGA AGTTTTTGAAACTTAATCTTTCAATTTCAATACCTTATGCAACATATGATATGTCTGACTCAATTTTTAATTCGGTGATT ACAGAAATGGGCTATATAGCAGATTTTGCTTTCGTACTTGATGCAGAATTTCTGATAAAAGAAAAGAGGATTAAAGGGAA CGTACTGACTTTACTTGATCCGAAATCTCTTAGCTGTTTGCTGGAAAGAATCAATTCGATGATTAATCAAAATGCTTGA
Upstream 100 bases:
>100_bases GAAATCCATAATGGAAGAAGTACATAACGAAAGAAATTCATAACGAAAGAAATACGTATGAAAGAGATCTGAAAAACCGA AGAAAACTATGGGGAATTTT
Downstream 100 bases:
>100_bases TTATTACATTAAAATTAACAGGACAGAAACCATATAAAAGGAACAGATAATCACAAAATAATAATCAGTTTTCAAACCAG TAAATATCAAACCGATAACT
Product: chemotaxis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MEEITSLSEFEYGALKEIGNIGIGNSAVSLSRLVNSLVCTKVIDTELGLIEDIPKIAGFSESPVMGTLIRIKEDLNGYIL VFFPETSAESLYISLSGEEIEKNLTDPVKRSLKISLIEEVSHILAGTYVTSLAKFLKLNLSISIPYATYDMSDSIFNSVI TEMGYIADFAFVLDAEFLIKEKRIKGNVLTLLDPKSLSCLLERINSMINQNA
Sequences:
>Translated_212_residues MEEITSLSEFEYGALKEIGNIGIGNSAVSLSRLVNSLVCTKVIDTELGLIEDIPKIAGFSESPVMGTLIRIKEDLNGYIL VFFPETSAESLYISLSGEEIEKNLTDPVKRSLKISLIEEVSHILAGTYVTSLAKFLKLNLSISIPYATYDMSDSIFNSVI TEMGYIADFAFVLDAEFLIKEKRIKGNVLTLLDPKSLSCLLERINSMINQNA >Mature_212_residues MEEITSLSEFEYGALKEIGNIGIGNSAVSLSRLVNSLVCTKVIDTELGLIEDIPKIAGFSESPVMGTLIRIKEDLNGYIL VFFPETSAESLYISLSGEEIEKNLTDPVKRSLKISLIEEVSHILAGTYVTSLAKFLKLNLSISIPYATYDMSDSIFNSVI TEMGYIADFAFVLDAEFLIKEKRIKGNVLTLLDPKSLSCLLERINSMINQNA
Specific function: Involved in restoring normal CheY-P levels following the addition of attractant by increasing the rate of CheY-P hydrolysis. Is only 6% as active as FliY, which indicates that CheC may function after addition of an attractant to cope with increased levels
COG id: COG1776
COG function: function code NT; Chemotaxis protein CheC, inhibitor of MCP methylation
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CheC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007597 [H]
Pfam domain/function: PF04509 CheC [H]
EC number: NA
Molecular weight: Translated: 23371; Mature: 23371
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEEITSLSEFEYGALKEIGNIGIGNSAVSLSRLVNSLVCTKVIDTELGLIEDIPKIAGFS CCCHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ESPVMGTLIRIKEDLNGYILVFFPETSAESLYISLSGEEIEKNLTDPVKRSLKISLIEEV CCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH SHILAGTYVTSLAKFLKLNLSISIPYATYDMSDSIFNSVITEMGYIADFAFVLDAEFLIK HHHHHHHHHHHHHHHHHHCCEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKRIKGNVLTLLDPKSLSCLLERINSMINQNA HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MEEITSLSEFEYGALKEIGNIGIGNSAVSLSRLVNSLVCTKVIDTELGLIEDIPKIAGFS CCCHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ESPVMGTLIRIKEDLNGYILVFFPETSAESLYISLSGEEIEKNLTDPVKRSLKISLIEEV CCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH SHILAGTYVTSLAKFLKLNLSISIPYATYDMSDSIFNSVITEMGYIADFAFVLDAEFLIK HHHHHHHHHHHHHHHHHHCCEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKRIKGNVLTLLDPKSLSCLLERINSMINQNA HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2832368; 9384377 [H]