Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21227143

Identifier: 21227143

GI number: 21227143

Start: 1216864

End: 1218231

Strand: Direct

Name: 21227143

Synonym: MM_1041

Alternate gene names: NA

Gene position: 1216864-1218231 (Clockwise)

Preceding gene: 21227142

Following gene: 21227144

Centisome position: 29.71

GC content: 47.51

Gene sequence:

>1368_bases
TTGAGTACTGATATATTCAGTTCCATCCCGGAACTGATTTCGGGCATCCTCATATCTTCATGGGAAATCTTTGTAGAAGC
TGCTCCTTACCTTATTTTCGGATTTGCAATCGCAGGCATCCTCAATGTCCTTGTGCCGGATCAGAAAATTGTAGAATATC
TTGGAACATCAGCAGGAAAAATCCGTTCCGTAATCAATGCCGCTCTGGCAGGGCTTCCCCTTCCTCTCTGCTCCTGCGGA
GTTATCCCGGCAGCAATGTCCATAAGGAAAAGAGGAGCAAACCGGGGTGCGACCCTTTCCTTCCTGATTTCAACTCCTCA
GACAGGAATGGACTCTATTTCTATCACGTACGCCCTCCTTGACCCTCTGATGGCTGTTTTTCGCCCGCTTGCGACCCTTG
CAACCGCAATCCTTGCAGGGATTGCAGATAACCTGCTGATAGGGGAGGATCCGGAAAAAAGCGGAAAAAGTGAAAATGAG
AAAGCCGGAAAGAAAGCTGAAATCCTTGCTGTCTCAACTCTTGTTGGCGTATCAGTAAGCGGAGATAAATGCAGTCCCGT
TTCATGCAACTGCGGAACACATGAAGCAACAGAAACGGGAAAAGAGAAACATCCTGACAAGAATACTGTGCCTTTAAAGT
CCGGAACTCTGGAATTAAAGTCCGAGACCGGAAGAGAGACTTCACATCTTAAAATTACGCCTGCAATTCATGCTTCTGAA
AATAACACCCCTTCATGTGGCTGCGGACACTGTGGAGAGGGGAAAAGAGAACAGTTCTCTGACAAAAGGGTTAAAAAGTC
CATAAAAGAAGACATTCTGGAATGCCTGAAATATGCCTTCATAGAACTTCCGGGAGAAATTGCCAAATGGATGCTTATAG
GTATTCTGCTTGCAGGAATAATTTCCTACGCTATTCCCGAAACCCTGGTCCAGGAATACCTTGGTGGTGGTTTCAGTTCA
ATGCTGGTCATGCTTGTAATAGGCATCCCGCTTTACATCTGCGCTACCGCTTCAACTCCTCTTGCAGCAAGCCTGGTAGC
CAAAGGGATGAGTCCTGGCACAGCTTTTGTTTTCCTGCTTGCAGGACCTGCAACCAATGCGGCAACCATAACCATGGTCG
CCCGGTTTCTGGGGAAACGTTCCGCAGTCCTTTATGTTGGAGTAATCTCACTCTGTGCCATTGGAGCAGGAATCCTTCTT
GACTGGCTTTACTTCAAACTGGGAATAAGCGTTACTGCAACCCTTGGAAGTGCAGAAGAAATGCTCCCTGAGAGTATTAA
GCTCGGTTTTGCGGTCCTTCTTCTCCCTCTAATGCTGTACGGAATTTTCCGAAGGAACCATGGGCGCGGCTGCACCGAAT
GTCACTGA

Upstream 100 bases:

>100_bases
TAAGGGTCAGGAGGGAAGGAAAATTTACAGTTTACTATATTGCAGATGAACATGTACGCACACTTATCGAGATGTGCCTT
GAGCACGTGGAGGAAAAAGC

Downstream 100 bases:

>100_bases
AAAAAGAAGCAGAGCAGCAATAACTTAGCAAGGACAGTTAAAGAATTAATAAGTACCAGATAATATAAATCCTCCTAAAT
AGAATAAACAATATGCAGGA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSTDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGKIRSVINAALAGLPLPLCSCG
VIPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALLDPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENE
KAGKKAEILAVSTLVGVSVSGDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASE
NNTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGIISYAIPETLVQEYLGGGFSS
MLVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLLAGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILL
DWLYFKLGISVTATLGSAEEMLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH

Sequences:

>Translated_455_residues
MSTDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGKIRSVINAALAGLPLPLCSCG
VIPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALLDPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENE
KAGKKAEILAVSTLVGVSVSGDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASE
NNTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGIISYAIPETLVQEYLGGGFSS
MLVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLLAGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILL
DWLYFKLGISVTATLGSAEEMLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH
>Mature_454_residues
STDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGKIRSVINAALAGLPLPLCSCGV
IPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALLDPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENEK
AGKKAEILAVSTLVGVSVSGDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASEN
NTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGIISYAIPETLVQEYLGGGFSSM
LVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLLAGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILLD
WLYFKLGISVTATLGSAEEMLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 47981; Mature: 47850

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH
IRSVINAALAGLPLPLCSCGVIPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALL
HHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
DPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENEKAGKKAEILAVSTLVGVSVS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHEEEHHHHEEEEC
GDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASE
CCCCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEECCC
NNTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ISYAIPETLVQEYLGGGFSSMLVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEE
AGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILLDWLYFKLGISVTATLGSAEE
ECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCHHH
MLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
STDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH
IRSVINAALAGLPLPLCSCGVIPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALL
HHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
DPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENEKAGKKAEILAVSTLVGVSVS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHEEEHHHHEEEEC
GDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASE
CCCCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEECCC
NNTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ISYAIPETLVQEYLGGGFSSMLVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEE
AGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILLDWLYFKLGISVTATLGSAEE
ECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCHHH
MLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]