| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227126
Identifier: 21227126
GI number: 21227126
Start: 1195815
End: 1196918
Strand: Direct
Name: 21227126
Synonym: MM_1024
Alternate gene names: NA
Gene position: 1195815-1196918 (Clockwise)
Preceding gene: 21227125
Following gene: 21227138
Centisome position: 29.19
GC content: 42.12
Gene sequence:
>1104_bases TTGCTGGTCCTCGTAATTCTGGCCCTTTTCACATCGGGCTGCACGGAAAGAGAGCTGAGCGCTGAAGAGATTGTATCCCG GATGATGGAAAAACAGGGCAGCATTCAGGATTATTCGTACACGATGCATATGACCTCCTATATAGGGAAACAGGTTGTAG AAAATGAGTTTAACTCCATATACAAAAAACCGCACATGATGAAAAATTTCATAAAAGAGCCGGGAAAGGAAGAAGAGACA CTTGTGCTCTCTGATGGAGAATTCAGGTGGACTTATATCCCTGGGACAAACACAGTTATGAAAACAAAAATTCCCGATAC CCCGGAGTTAAACGAAAATGACTATCTTTTACTCGTAAAAATCGCCCTTAACGATACGAACCTATCTATGCTCGGGACAG AGGAAGTTGAAGGAAGGAAAAAAGCTTACCTGCTAGAAGCGACTCCGAAAAAGACAGGAGAACAGGTCCCTGAATACAGC ATGAAAGTCTGGATAGACAAAGAAACCTGGATGTTCCTCGGATACGAAATGTACGATAGCAGTGAGAGCAATAAGACGCT GATTTCAAAAGTAGAAATCCGGGACCTGAAAGTAAACACCGGAATTCCGGATTCTGAGTTTGTATTCAAAATCCCGGAAG GAGCAACCGTACAGACCATTGAAACAATAGAGACCGTGGAACACGGAGAATTGAATCCTTCTGGAGAATTAAGCCTTAAA GAAGCTGAGGAACGTGTCGGGTTTGAAATCCTGATCCCGGAGTACCTGCCAGAAAGTTATGAATTCAGCCATGCTATAGT CTACAAAACAGATAAAACATCTCCAGAAGGTAAGGCTTACGAAACGGTCTCCCTGACTTACAAATATGGAGAAAACAGCA TAATTATTACAGAAACCGTATATGAAGGAAGCCAAACCCAGGATGCTGCAATCATGGATCCTGCCGAAGAAGTTTTAATC AGTGGAACCGAAGGAAAATATGTTTCAACAAGGGATTTGAACCTGTTGAACTGGAAGCTTGAAAACGTTAACCTGACCAT GACCTCTTCCCTGGAAAAAAACAAGCTTTTGAAAATTGCTGAATCAATGGTGGTAAAGAAATAA
Upstream 100 bases:
>100_bases GAATTGCGGAGTCCATACGGGAGGATACCTAAAAAACCCGTTTAATAGCAGTTAAAGCTGGAAAAAGGTGAGGAATATGG TAACAAAGAAAGTGCTATTC
Downstream 100 bases:
>100_bases ATTCGGCATAATTCCAGAATAGTGAATTCATCGGAACACGGAAAAAATAGGGAAAAACAGAATAAAAATCGAAAATATGA GGATAAAAGAAAAGGTGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MLVLVILALFTSGCTERELSAEEIVSRMMEKQGSIQDYSYTMHMTSYIGKQVVENEFNSIYKKPHMMKNFIKEPGKEEET LVLSDGEFRWTYIPGTNTVMKTKIPDTPELNENDYLLLVKIALNDTNLSMLGTEEVEGRKKAYLLEATPKKTGEQVPEYS MKVWIDKETWMFLGYEMYDSSESNKTLISKVEIRDLKVNTGIPDSEFVFKIPEGATVQTIETIETVEHGELNPSGELSLK EAEERVGFEILIPEYLPESYEFSHAIVYKTDKTSPEGKAYETVSLTYKYGENSIIITETVYEGSQTQDAAIMDPAEEVLI SGTEGKYVSTRDLNLLNWKLENVNLTMTSSLEKNKLLKIAESMVVKK
Sequences:
>Translated_367_residues MLVLVILALFTSGCTERELSAEEIVSRMMEKQGSIQDYSYTMHMTSYIGKQVVENEFNSIYKKPHMMKNFIKEPGKEEET LVLSDGEFRWTYIPGTNTVMKTKIPDTPELNENDYLLLVKIALNDTNLSMLGTEEVEGRKKAYLLEATPKKTGEQVPEYS MKVWIDKETWMFLGYEMYDSSESNKTLISKVEIRDLKVNTGIPDSEFVFKIPEGATVQTIETIETVEHGELNPSGELSLK EAEERVGFEILIPEYLPESYEFSHAIVYKTDKTSPEGKAYETVSLTYKYGENSIIITETVYEGSQTQDAAIMDPAEEVLI SGTEGKYVSTRDLNLLNWKLENVNLTMTSSLEKNKLLKIAESMVVKK >Mature_367_residues MLVLVILALFTSGCTERELSAEEIVSRMMEKQGSIQDYSYTMHMTSYIGKQVVENEFNSIYKKPHMMKNFIKEPGKEEET LVLSDGEFRWTYIPGTNTVMKTKIPDTPELNENDYLLLVKIALNDTNLSMLGTEEVEGRKKAYLLEATPKKTGEQVPEYS MKVWIDKETWMFLGYEMYDSSESNKTLISKVEIRDLKVNTGIPDSEFVFKIPEGATVQTIETIETVEHGELNPSGELSLK EAEERVGFEILIPEYLPESYEFSHAIVYKTDKTSPEGKAYETVSLTYKYGENSIIITETVYEGSQTQDAAIMDPAEEVLI SGTEGKYVSTRDLNLLNWKLENVNLTMTSSLEKNKLLKIAESMVVKK
Specific function: Unknown
COG id: COG2834
COG function: function code M; Outer membrane lipoprotein-sorting protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004564 [H]
Pfam domain/function: PF03548 LolA [H]
EC number: NA
Molecular weight: Translated: 41752; Mature: 41752
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVLVILALFTSGCTERELSAEEIVSRMMEKQGSIQDYSYTMHMTSYIGKQVVENEFNSI CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHH YKKPHMMKNFIKEPGKEEETLVLSDGEFRWTYIPGTNTVMKTKIPDTPELNENDYLLLVK HCCHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEE IALNDTNLSMLGTEEVEGRKKAYLLEATPKKTGEQVPEYSMKVWIDKETWMFLGYEMYDS EEECCCCEEEEECHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEEEEEECC SESNKTLISKVEIRDLKVNTGIPDSEFVFKIPEGATVQTIETIETVEHGELNPSGELSLK CCCCCEEEEEEEEEEEEEECCCCCCCEEEECCCCCEEEHHHHHHHHHCCCCCCCCCEEHH EAEERVGFEILIPEYLPESYEFSHAIVYKTDKTSPEGKAYETVSLTYKYGENSIIITETV HHHHHCCEEEEEHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEEEE YEGSQTQDAAIMDPAEEVLISGTEGKYVSTRDLNLLNWKLENVNLTMTSSLEKNKLLKIA ECCCCCCCCEECCCHHHHEEECCCCCEEEECCCEEEEEEEECEEEEEECCCCHHHHHHHH ESMVVKK HHHHCCC >Mature Secondary Structure MLVLVILALFTSGCTERELSAEEIVSRMMEKQGSIQDYSYTMHMTSYIGKQVVENEFNSI CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHH YKKPHMMKNFIKEPGKEEETLVLSDGEFRWTYIPGTNTVMKTKIPDTPELNENDYLLLVK HCCHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEE IALNDTNLSMLGTEEVEGRKKAYLLEATPKKTGEQVPEYSMKVWIDKETWMFLGYEMYDS EEECCCCEEEEECHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEEEEEECC SESNKTLISKVEIRDLKVNTGIPDSEFVFKIPEGATVQTIETIETVEHGELNPSGELSLK CCCCCEEEEEEEEEEEEEECCCCCCCEEEECCCCCEEEHHHHHHHHHCCCCCCCCCEEHH EAEERVGFEILIPEYLPESYEFSHAIVYKTDKTSPEGKAYETVSLTYKYGENSIIITETV HHHHHCCEEEEEHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEEEE YEGSQTQDAAIMDPAEEVLISGTEGKYVSTRDLNLLNWKLENVNLTMTSSLEKNKLLKIA ECCCCCCCCEECCCHHHHEEECCCCCEEEECCCEEEEEEEECEEEEEECCCCHHHHHHHH ESMVVKK HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]