| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227054
Identifier: 21227054
GI number: 21227054
Start: 1129151
End: 1130395
Strand: Reverse
Name: 21227054
Synonym: MM_0952
Alternate gene names: NA
Gene position: 1130395-1129151 (Counterclockwise)
Preceding gene: 21227055
Following gene: 21227053
Centisome position: 27.6
GC content: 41.53
Gene sequence:
>1245_bases ATGGGGTTAATTAAAGAGCGTATTATTGCAACTTTTTTTTCTTTACTTCTAGTTGCCTCAGTTTTTGCATGTCCGGCTTC TGCAGCAGTGGGAAGTGCAAACCTGAAAGTAACGATCGTTGAAACAAATCCTTATCCTGCAAAAATAGGAGAGTATCTTA CCCTGAATATACAGGTGGAAAATGTCGGAGGAGCCAAAGCGGATAACATTGATATTGAAGTAGTCCCTGAATTTCCTTTT TCTCTTGACTCTAAGGAAAATGCCCGGCAGAACATCGGAGCTCTCAATCCTGGCAGGACTGCTACAAAAGAGTTCTATCT GTTTGTTGATAAAAGCGCCAAGAAAGGAAGTCGTTCTATAGACATCCGTACGAGAACGAGCCCGAATGATCCATGGAGTG AACAATCTTTTGATATAAGAGTAGGCACTGAGACATTTACCAGCAAAGGCACTGTCGAACTTGCAGAGATCGTCTCGTCC CCTGAGGTCTTTATGCCAGGAGATGAAGGTACTGTCACAGTAACTCTTAAGAATACCGCAACTGCGGCTACAGTTAGCAT CGATGGAAAAGATTACGATACCAATGCAAGGATTCAGGCTGCAGTTTTAAGGCCGTTGTCTGATGGAATTCGTGTTCAGT ACGCTCCCTATTACGAAATGGGACTTTTGGGGCCGGGAGAAAGTATTAAATTGACTTTCAATATCGAGGTTGAGGAAGAT GCTAAAGAAGGAGTTCACAACCTTGAACTTGATATCGAAGGAAACTCTTATGACTATAACAGCCGGAAGAATATCCCGCT CAAAGTTGACTCTTCAAATATTAAGGTGATTACTTCAAAACCACTTGAGCTGGTAAATGGTCAAGCTATAGTAGAGTTTG ACGTAGCAAACACTCATCCAAACGAGCTAAACTCTGTCAGCATAAGACCTGAAGCTGAAGGTCTGAAATTTTATCCTGCA GAATACTTCATAGGACCTATGGACCCTGATGAACTGTTCACCATAAAATTTGATGCTGTCCGGGACAATTCTTCGGGATC TGACAATGAAGACTCAGAAGGCATAAATATGTCTGTTACTGCAAGCTATAATAATGGAATTAACAGACACGAAAATGTTG CAGGTAACCTGGAATTTGCAACTGACTCTTTGCCTTCTGAAGGAAACTCTACAGTTGCAATTGCGGGTGTTATTGCAGTC ATTTTTATCCCTGCAGCTGTTCTCCTGTATAGAAGAAAAAAATAA
Upstream 100 bases:
>100_bases CACACGACCCCGAGATCGCAAAATTTGCTGATAGGGTCATCCTGGTAAAAGATGGAACAATTCAATATAATTAATTAAAC GATAGATAAGGTGGGAATAT
Downstream 100 bases:
>100_bases TGAGTGAATGAAGGCCTTCTAAATGTCATATTTGCGGGGGTAAAATATGATACAATTTGTACAGGCGGCTCACATTGCTT CAGGAAGCATACGCAGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MGLIKERIIATFFSLLLVASVFACPASAAVGSANLKVTIVETNPYPAKIGEYLTLNIQVENVGGAKADNIDIEVVPEFPF SLDSKENARQNIGALNPGRTATKEFYLFVDKSAKKGSRSIDIRTRTSPNDPWSEQSFDIRVGTETFTSKGTVELAEIVSS PEVFMPGDEGTVTVTLKNTATAATVSIDGKDYDTNARIQAAVLRPLSDGIRVQYAPYYEMGLLGPGESIKLTFNIEVEED AKEGVHNLELDIEGNSYDYNSRKNIPLKVDSSNIKVITSKPLELVNGQAIVEFDVANTHPNELNSVSIRPEAEGLKFYPA EYFIGPMDPDELFTIKFDAVRDNSSGSDNEDSEGINMSVTASYNNGINRHENVAGNLEFATDSLPSEGNSTVAIAGVIAV IFIPAAVLLYRRKK
Sequences:
>Translated_414_residues MGLIKERIIATFFSLLLVASVFACPASAAVGSANLKVTIVETNPYPAKIGEYLTLNIQVENVGGAKADNIDIEVVPEFPF SLDSKENARQNIGALNPGRTATKEFYLFVDKSAKKGSRSIDIRTRTSPNDPWSEQSFDIRVGTETFTSKGTVELAEIVSS PEVFMPGDEGTVTVTLKNTATAATVSIDGKDYDTNARIQAAVLRPLSDGIRVQYAPYYEMGLLGPGESIKLTFNIEVEED AKEGVHNLELDIEGNSYDYNSRKNIPLKVDSSNIKVITSKPLELVNGQAIVEFDVANTHPNELNSVSIRPEAEGLKFYPA EYFIGPMDPDELFTIKFDAVRDNSSGSDNEDSEGINMSVTASYNNGINRHENVAGNLEFATDSLPSEGNSTVAIAGVIAV IFIPAAVLLYRRKK >Mature_413_residues GLIKERIIATFFSLLLVASVFACPASAAVGSANLKVTIVETNPYPAKIGEYLTLNIQVENVGGAKADNIDIEVVPEFPFS LDSKENARQNIGALNPGRTATKEFYLFVDKSAKKGSRSIDIRTRTSPNDPWSEQSFDIRVGTETFTSKGTVELAEIVSSP EVFMPGDEGTVTVTLKNTATAATVSIDGKDYDTNARIQAAVLRPLSDGIRVQYAPYYEMGLLGPGESIKLTFNIEVEEDA KEGVHNLELDIEGNSYDYNSRKNIPLKVDSSNIKVITSKPLELVNGQAIVEFDVANTHPNELNSVSIRPEAEGLKFYPAE YFIGPMDPDELFTIKFDAVRDNSSGSDNEDSEGINMSVTASYNNGINRHENVAGNLEFATDSLPSEGNSTVAIAGVIAVI FIPAAVLLYRRKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44964; Mature: 44833
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLIKERIIATFFSLLLVASVFACPASAAVGSANLKVTIVETNPYPAKIGEYLTLNIQVE CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEE NVGGAKADNIDIEVVPEFPFSLDSKENARQNIGALNPGRTATKEFYLFVDKSAKKGSRSI ECCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEE DIRTRTSPNDPWSEQSFDIRVGTETFTSKGTVELAEIVSSPEVFMPGDEGTVTVTLKNTA EEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCEEECCCCCEEEEEEECCC TAATVSIDGKDYDTNARIQAAVLRPLSDGIRVQYAPYYEMGLLGPGESIKLTFNIEVEED EEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCH AKEGVHNLELDIEGNSYDYNSRKNIPLKVDSSNIKVITSKPLELVNGQAIVEFDVANTHP HHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCHHHHCCCEEEEEEECCCCC NELNSVSIRPEAEGLKFYPAEYFIGPMDPDELFTIKFDAVRDNSSGSDNEDSEGINMSVT CCCCEEEECCCCCCCEEECHHEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEE ASYNNGINRHENVAGNLEFATDSLPSEGNSTVAIAGVIAVIFIPAAVLLYRRKK EECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GLIKERIIATFFSLLLVASVFACPASAAVGSANLKVTIVETNPYPAKIGEYLTLNIQVE CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEE NVGGAKADNIDIEVVPEFPFSLDSKENARQNIGALNPGRTATKEFYLFVDKSAKKGSRSI ECCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEE DIRTRTSPNDPWSEQSFDIRVGTETFTSKGTVELAEIVSSPEVFMPGDEGTVTVTLKNTA EEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCEEECCCCCEEEEEEECCC TAATVSIDGKDYDTNARIQAAVLRPLSDGIRVQYAPYYEMGLLGPGESIKLTFNIEVEED EEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCH AKEGVHNLELDIEGNSYDYNSRKNIPLKVDSSNIKVITSKPLELVNGQAIVEFDVANTHP HHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCHHHHCCCEEEEEEECCCCC NELNSVSIRPEAEGLKFYPAEYFIGPMDPDELFTIKFDAVRDNSSGSDNEDSEGINMSVT CCCCEEEECCCCCCCEEECHHEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEE ASYNNGINRHENVAGNLEFATDSLPSEGNSTVAIAGVIAVIFIPAAVLLYRRKK EECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA