| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226924
Identifier: 21226924
GI number: 21226924
Start: 973218
End: 973544
Strand: Reverse
Name: 21226924
Synonym: MM_0822
Alternate gene names: NA
Gene position: 973544-973218 (Counterclockwise)
Preceding gene: 21226929
Following gene: 21226923
Centisome position: 23.77
GC content: 43.43
Gene sequence:
>327_bases ATGAGATCCATGTCCTTTGAAGAGGCAATAAAATCTTTGGATTCCGGTATTATTGTGGATATCGAAGTCACTCCGGGTTC CAGATCGCTTTCTGTCCCGAGCGGCTATAATGAATGGCGAAAGAGAATTGAAGTAAAGCTGACCAGAAATGCCCAGAAAG GAAAGGCAAATGAGCAGCTTATTGAAAGCCTTGCAGAGCTTTTTGGCATATGCAGTTCTGATATCTTTATAAGTAGCGGA GCCACAAGCAGCAAGAAGTCCTTGCTGATAAAAGGGGTATCCTATCAGCAAGCTGTTCTGGTTTTCGGGAAACACTTAAA GGGTTGA
Upstream 100 bases:
>100_bases TTCATTTCGGCTGCTTTTTATTTATCCTCTGCCTTTTGCTAATGGCTCTTATTACAAATTCCCAGGTTTCGTCACTAATT TATATAATATATTTTAAAAG
Downstream 100 bases:
>100_bases AGCCAGGAGTTTTAGACAGTTTTCCTGACTGGCAGGCTTTCTTACCACACTTCCTGTTTAACGAAAAAGGTTGAAGAATA ACGTGACTGATGTTGATGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 108
Protein sequence:
>108_residues MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQLIESLAELFGICSSDIFISSG ATSSKKSLLIKGVSYQQAVLVFGKHLKG
Sequences:
>Translated_108_residues MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQLIESLAELFGICSSDIFISSG ATSSKKSLLIKGVSYQQAVLVFGKHLKG >Mature_108_residues MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQLIESLAELFGICSSDIFISSG ATSSKKSLLIKGVSYQQAVLVFGKHLKG
Specific function: Unknown
COG id: COG1872
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0235 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y822_METMA (Q8PYN9)
Other databases:
- EMBL: AE008384 - RefSeq: NP_632846.1 - ProteinModelPortal: Q8PYN9 - SMR: Q8PYN9 - GeneID: 1479164 - GenomeReviews: AE008384_GR - KEGG: mma:MM_0822 - NMPDR: fig|192952.1.peg.822 - HOGENOM: HBG472132 - OMA: PAGYNEW - ProtClustDB: CLSK812038 - BioCyc: MMAZ192952:MM0822-MONOMER - HAMAP: MF_00634 - InterPro: IPR005228 - InterPro: IPR003746 - Gene3D: G3DSA:3.30.1200.10 - TIGRFAMs: TIGR00251
Pfam domain/function: PF02594 DUF167; SSF69786 DUF167
EC number: NA
Molecular weight: Translated: 11793; Mature: 11793
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQL CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHEEHEEECCCCCCCCHHHH IESLAELFGICSSDIFISSGATSSKKSLLIKGVSYQQAVLVFGKHLKG HHHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCC >Mature Secondary Structure MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQL CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHEEHEEECCCCCCCCHHHH IESLAELFGICSSDIFISSGATSSKKSLLIKGVSYQQAVLVFGKHLKG HHHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12125824