The gene/protein map for NC_003901 is currently unavailable.
Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21226924

Identifier: 21226924

GI number: 21226924

Start: 973218

End: 973544

Strand: Reverse

Name: 21226924

Synonym: MM_0822

Alternate gene names: NA

Gene position: 973544-973218 (Counterclockwise)

Preceding gene: 21226929

Following gene: 21226923

Centisome position: 23.77

GC content: 43.43

Gene sequence:

>327_bases
ATGAGATCCATGTCCTTTGAAGAGGCAATAAAATCTTTGGATTCCGGTATTATTGTGGATATCGAAGTCACTCCGGGTTC
CAGATCGCTTTCTGTCCCGAGCGGCTATAATGAATGGCGAAAGAGAATTGAAGTAAAGCTGACCAGAAATGCCCAGAAAG
GAAAGGCAAATGAGCAGCTTATTGAAAGCCTTGCAGAGCTTTTTGGCATATGCAGTTCTGATATCTTTATAAGTAGCGGA
GCCACAAGCAGCAAGAAGTCCTTGCTGATAAAAGGGGTATCCTATCAGCAAGCTGTTCTGGTTTTCGGGAAACACTTAAA
GGGTTGA

Upstream 100 bases:

>100_bases
TTCATTTCGGCTGCTTTTTATTTATCCTCTGCCTTTTGCTAATGGCTCTTATTACAAATTCCCAGGTTTCGTCACTAATT
TATATAATATATTTTAAAAG

Downstream 100 bases:

>100_bases
AGCCAGGAGTTTTAGACAGTTTTCCTGACTGGCAGGCTTTCTTACCACACTTCCTGTTTAACGAAAAAGGTTGAAGAATA
ACGTGACTGATGTTGATGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQLIESLAELFGICSSDIFISSG
ATSSKKSLLIKGVSYQQAVLVFGKHLKG

Sequences:

>Translated_108_residues
MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQLIESLAELFGICSSDIFISSG
ATSSKKSLLIKGVSYQQAVLVFGKHLKG
>Mature_108_residues
MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQLIESLAELFGICSSDIFISSG
ATSSKKSLLIKGVSYQQAVLVFGKHLKG

Specific function: Unknown

COG id: COG1872

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0235 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y822_METMA (Q8PYN9)

Other databases:

- EMBL:   AE008384
- RefSeq:   NP_632846.1
- ProteinModelPortal:   Q8PYN9
- SMR:   Q8PYN9
- GeneID:   1479164
- GenomeReviews:   AE008384_GR
- KEGG:   mma:MM_0822
- NMPDR:   fig|192952.1.peg.822
- HOGENOM:   HBG472132
- OMA:   PAGYNEW
- ProtClustDB:   CLSK812038
- BioCyc:   MMAZ192952:MM0822-MONOMER
- HAMAP:   MF_00634
- InterPro:   IPR005228
- InterPro:   IPR003746
- Gene3D:   G3DSA:3.30.1200.10
- TIGRFAMs:   TIGR00251

Pfam domain/function: PF02594 DUF167; SSF69786 DUF167

EC number: NA

Molecular weight: Translated: 11793; Mature: 11793

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQL
CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHEEHEEECCCCCCCCHHHH
IESLAELFGICSSDIFISSGATSSKKSLLIKGVSYQQAVLVFGKHLKG
HHHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSMSFEEAIKSLDSGIIVDIEVTPGSRSLSVPSGYNEWRKRIEVKLTRNAQKGKANEQL
CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHEEHEEECCCCCCCCHHHH
IESLAELFGICSSDIFISSGATSSKKSLLIKGVSYQQAVLVFGKHLKG
HHHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824