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The map label for this gene is 21226441

Identifier: 21226441

GI number: 21226441

Start: 447635

End: 447853

Strand: Direct

Name: 21226441

Synonym: MM_0339

Alternate gene names: NA

Gene position: 447635-447853 (Clockwise)

Preceding gene: 21226438

Following gene: 21226442

Centisome position: 10.93

GC content: 44.29

Gene sequence:

>219_bases
ATGGCAAACCGACCTCTGGATATTTTGAACAACGCACTGGACACACCCGTTATCGTAAGATTGAAAGGCGCACGTGAGTT
TAGGGGCGAGCTGAAAGGATACGATATTCACATGAATCTCGTGCTTGACAATGCTGAAGAATTAAGAGAAGGAGAAGTAG
TAAGTAAATTCAGCAGTGTCGTTATTCGCGGTGACAACGTCGTATACGTATCTCCGTAA

Upstream 100 bases:

>100_bases
ATCGAATACTTAAGCGCGGCGATCAGTTTAAGTCTGGATTAACTATTTATATTGATATAGATAATGACTTGATTTATAAT
GTTTTAAGGGGATTGTAAGG

Downstream 100 bases:

>100_bases
TCTATATCAAGCACTTCATCTATTATCGTTAAACTCGGTAAGCAGCAAGATCTGTAGAGCTGGGATGAATTCAGAAAAAC
GAAATCGCTTCGAATTATCG

Product: small nuclear ribonucleoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MANRPLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRGDNVVYVSP

Sequences:

>Translated_72_residues
MANRPLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRGDNVVYVSP
>Mature_71_residues
ANRPLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRGDNVVYVSP

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the snRNP Sm proteins family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR001163
- InterPro:   IPR006649
- InterPro:   IPR022901 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8054; Mature: 7923

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANRPLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSV
CCCCCHHHHHCCCCCCEEEEEECCHHHCCCCCCEEEEEEEEECCHHHHHCCHHHHHHCEE
VIRGDNVVYVSP
EECCCCEEEECC
>Mature Secondary Structure 
ANRPLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSV
CCCCHHHHHCCCCCCEEEEEECCHHHCCCCCCEEEEEEEEECCHHHHHCCHHHHHHCEE
VIRGDNVVYVSP
EECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]