| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is ths [H]
Identifier: 21226174
GI number: 21226174
Start: 96455
End: 98158
Strand: Reverse
Name: ths [H]
Synonym: MM_0072
Alternate gene names: 21226174
Gene position: 98158-96455 (Counterclockwise)
Preceding gene: 21226175
Following gene: 21226171
Centisome position: 2.4
GC content: 49.06
Gene sequence:
>1704_bases ATGTCTTTCGCATTATCAGTTATTTGTCCTTCAATTCATACCATTATTTCAGGAGGTTTCGTTCAGATGGATAAAGGTGG CCAGCCAGTCTTTATAATAGATCCGAGAAAGGAACAGACAAAGGGAAGAGACGCACTCAGCATGAACATTGCAGCCGCAA AGGCAGTAGCAAACATAGTTAAGAGTACGCTCGGACCCCGGGGAATGGACAAGATGCTTGTAAACCCTCTGGGAGATATC ACCATCACCAACGATGGTGCCACTATCTTACATGACATGGACATCGAGCATCCTACAGCCAAGATGATTGTGGAAGTTGC CCAGTCTCTGGAAAATTCTGCAGGAGACGGGACAACAAGCGCTGTTGTGTTCACCGGTGCCCTGCTGGAAAAAGCGGAAA GTCTTATTGAAAAGGGTGTCCACCCGGCGGTAGTCGTTAAAGGTTACAGGCTTGCAGCAGAGAAAGCTGTTGAGGTTTTT GAGAAGCTTGCAGTCCCAGCAAAAGAAAGGGAGCTGCTTATCAAAGCTGCCAGGACATCCATTACTGGCAAGGCTTCTGA AAAATACAGCAATTTGATTGCAGAAATCTGTGTGGACGCAGTTCTTGCAATTCATGAGGACGGAAAAGCCGACCTTAAAC ATGTCATCCTTTCTAAAGATGTCGGCGGGCTTGTTGAAGACACCGAATTCGTGGAAGGCATTGTGATTGACAAGGTTGCT CTTGATAAAAAAGCCCCTTTGAAGATCGTAAACCCGAATATCGCGCTCATTGATGCTCCTATGGAGACTGCAAAGACAGC AAACAAAGCCAAGCTCCAGATCAGCACTGTAAGCGATATCGAAAATTTTGTGAAGCAGGAAGATGCAGCCCTCTTTGAAA TGGCGGATTACATAATCAGGGCAGGGGCAAATGCAGTCTTCTGTTCCAAGGGCATGGATGACAAGGTTGCAGCTTACCTC CAGAACAGGGGCATATATGCAACCCGCAGGGTGAAGAACGAAGACATGCAGCACCTTGCAGATGCTACGGGAGGAAGGCC TGTCAGAAATATAAAAGAACTTACTGAAAAAGAACTCGGGCATGCAGGGCTCCTTGAGCAGGACAGGGATGACGAGCAGG GCAAAACCTACCTCAGGGACTGCAAAGGTGCAAAATCAGTCTCAATCGTTCTCCGCGGAGGAACAGAGCACGTTGTGGAC AACCTGGAAAGGGCAGTTGATGACGCTCTCAAGGTTGCCAAATGCGTCGTTGAAGATGGCATGGTAGTTGCTGGCGGCGG GGCTTCGGAAATGGAAGTTGCGCTCTCTCTCCGTTCTTATGCTTCCAGTGTAGGCGGACGTGAACAGATGGCAATTGCAG CTTTTGCTGAGGCTCTTGAAGAGATCCCGAGAACGATTGCAAGAAATGCAGGCCTTGACACCATTAATACCATCGTGAAC CTGCGTGCAAAACACGCTGACAACAAAAATGCAGGTTTGAACGTCCTTACGGGCGCTGCCGAAGATATGCTCGAAAAAGG CATCATCGACCCCCTGAGAGTGAAGGTCAATTCCATCAAAGCAGGGTCAGAAGCTGCGACAATGGTGCTCCGTGTGGACA GCATGCTCCGCGCCCAGCGTACGGATATGCAGGACGTCAAACCCGAGCACAGGGCAAGCACCTATGAAGGGATGTCTGCA CCTGCACTAAACATGCACAGATAA
Upstream 100 bases:
>100_bases TTATCAGTTATTTCCTGATAAATTACTACCTGCAAGTCAAAGAAATTGCGCAAAATAAAGTGTCTGGTTTCGAGATTTCA GATTAAGAAACCGAGCCGGA
Downstream 100 bases:
>100_bases ACCTGAATCTTATTAAGCCGGATTCTTTTTCAGTTTAATAATTGAAAAAGAATCTACCTGTTTATTCGGGCAGGCTGCAG AAAAAACTGCAGCTTACTCT
Product: thermosome subunit
Products: NA
Alternate protein names: Chaperonin subunit [H]
Number of amino acids: Translated: 567; Mature: 566
Protein sequence:
>567_residues MSFALSVICPSIHTIISGGFVQMDKGGQPVFIIDPRKEQTKGRDALSMNIAAAKAVANIVKSTLGPRGMDKMLVNPLGDI TITNDGATILHDMDIEHPTAKMIVEVAQSLENSAGDGTTSAVVFTGALLEKAESLIEKGVHPAVVVKGYRLAAEKAVEVF EKLAVPAKERELLIKAARTSITGKASEKYSNLIAEICVDAVLAIHEDGKADLKHVILSKDVGGLVEDTEFVEGIVIDKVA LDKKAPLKIVNPNIALIDAPMETAKTANKAKLQISTVSDIENFVKQEDAALFEMADYIIRAGANAVFCSKGMDDKVAAYL QNRGIYATRRVKNEDMQHLADATGGRPVRNIKELTEKELGHAGLLEQDRDDEQGKTYLRDCKGAKSVSIVLRGGTEHVVD NLERAVDDALKVAKCVVEDGMVVAGGGASEMEVALSLRSYASSVGGREQMAIAAFAEALEEIPRTIARNAGLDTINTIVN LRAKHADNKNAGLNVLTGAAEDMLEKGIIDPLRVKVNSIKAGSEAATMVLRVDSMLRAQRTDMQDVKPEHRASTYEGMSA PALNMHR
Sequences:
>Translated_567_residues MSFALSVICPSIHTIISGGFVQMDKGGQPVFIIDPRKEQTKGRDALSMNIAAAKAVANIVKSTLGPRGMDKMLVNPLGDI TITNDGATILHDMDIEHPTAKMIVEVAQSLENSAGDGTTSAVVFTGALLEKAESLIEKGVHPAVVVKGYRLAAEKAVEVF EKLAVPAKERELLIKAARTSITGKASEKYSNLIAEICVDAVLAIHEDGKADLKHVILSKDVGGLVEDTEFVEGIVIDKVA LDKKAPLKIVNPNIALIDAPMETAKTANKAKLQISTVSDIENFVKQEDAALFEMADYIIRAGANAVFCSKGMDDKVAAYL QNRGIYATRRVKNEDMQHLADATGGRPVRNIKELTEKELGHAGLLEQDRDDEQGKTYLRDCKGAKSVSIVLRGGTEHVVD NLERAVDDALKVAKCVVEDGMVVAGGGASEMEVALSLRSYASSVGGREQMAIAAFAEALEEIPRTIARNAGLDTINTIVN LRAKHADNKNAGLNVLTGAAEDMLEKGIIDPLRVKVNSIKAGSEAATMVLRVDSMLRAQRTDMQDVKPEHRASTYEGMSA PALNMHR >Mature_566_residues SFALSVICPSIHTIISGGFVQMDKGGQPVFIIDPRKEQTKGRDALSMNIAAAKAVANIVKSTLGPRGMDKMLVNPLGDIT ITNDGATILHDMDIEHPTAKMIVEVAQSLENSAGDGTTSAVVFTGALLEKAESLIEKGVHPAVVVKGYRLAAEKAVEVFE KLAVPAKERELLIKAARTSITGKASEKYSNLIAEICVDAVLAIHEDGKADLKHVILSKDVGGLVEDTEFVEGIVIDKVAL DKKAPLKIVNPNIALIDAPMETAKTANKAKLQISTVSDIENFVKQEDAALFEMADYIIRAGANAVFCSKGMDDKVAAYLQ NRGIYATRRVKNEDMQHLADATGGRPVRNIKELTEKELGHAGLLEQDRDDEQGKTYLRDCKGAKSVSIVLRGGTEHVVDN LERAVDDALKVAKCVVEDGMVVAGGGASEMEVALSLRSYASSVGGREQMAIAAFAEALEEIPRTIARNAGLDTINTIVNL RAKHADNKNAGLNVLTGAAEDMLEKGIIDPLRVKVNSIKAGSEAATMVLRVDSMLRAQRTDMQDVKPEHRASTYEGMSAP ALNMHR
Specific function: Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity [H]
COG id: COG0459
COG function: function code O; Chaperonin GroEL (HSP60 family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TCP-1 chaperonin family [H]
Homologues:
Organism=Homo sapiens, GI63162572, Length=525, Percent_Identity=34.6666666666667, Blast_Score=335, Evalue=5e-92, Organism=Homo sapiens, GI24307939, Length=531, Percent_Identity=36.346516007533, Blast_Score=333, Evalue=2e-91, Organism=Homo sapiens, GI38455427, Length=504, Percent_Identity=34.3253968253968, Blast_Score=320, Evalue=2e-87, Organism=Homo sapiens, GI5453607, Length=523, Percent_Identity=32.887189292543, Blast_Score=308, Evalue=1e-83, Organism=Homo sapiens, GI57863257, Length=543, Percent_Identity=34.8066298342541, Blast_Score=302, Evalue=5e-82, Organism=Homo sapiens, GI261399877, Length=483, Percent_Identity=32.5051759834368, Blast_Score=278, Evalue=1e-74, Organism=Homo sapiens, GI4502643, Length=524, Percent_Identity=32.2519083969466, Blast_Score=274, Evalue=2e-73, Organism=Homo sapiens, GI58761484, Length=525, Percent_Identity=31.2380952380952, Blast_Score=274, Evalue=2e-73, Organism=Homo sapiens, GI58331173, Length=508, Percent_Identity=33.2677165354331, Blast_Score=271, Evalue=2e-72, Organism=Homo sapiens, GI302058290, Length=499, Percent_Identity=32.4649298597194, Blast_Score=249, Evalue=6e-66, Organism=Homo sapiens, GI261399875, Length=437, Percent_Identity=30.8924485125858, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI48762932, Length=540, Percent_Identity=32.4074074074074, Blast_Score=229, Evalue=4e-60, Organism=Homo sapiens, GI5453603, Length=530, Percent_Identity=30.7547169811321, Blast_Score=229, Evalue=5e-60, Organism=Homo sapiens, GI58331171, Length=524, Percent_Identity=28.4351145038168, Blast_Score=214, Evalue=1e-55, Organism=Homo sapiens, GI302058292, Length=508, Percent_Identity=29.3307086614173, Blast_Score=211, Evalue=2e-54, Organism=Homo sapiens, GI58331185, Length=319, Percent_Identity=30.7210031347962, Blast_Score=175, Evalue=1e-43, Organism=Homo sapiens, GI57863259, Length=389, Percent_Identity=30.8483290488432, Blast_Score=171, Evalue=2e-42, Organism=Homo sapiens, GI7657253, Length=512, Percent_Identity=24.4140625, Blast_Score=152, Evalue=1e-36, Organism=Homo sapiens, GI41399285, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI31542947, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1790586, Length=545, Percent_Identity=26.2385321100917, Blast_Score=99, Evalue=6e-22, Organism=Caenorhabditis elegans, GI25144674, Length=526, Percent_Identity=36.5019011406844, Blast_Score=335, Evalue=4e-92, Organism=Caenorhabditis elegans, GI17532603, Length=519, Percent_Identity=36.4161849710983, Blast_Score=305, Evalue=3e-83, Organism=Caenorhabditis elegans, GI17532601, Length=527, Percent_Identity=34.3453510436433, Blast_Score=298, Evalue=4e-81, Organism=Caenorhabditis elegans, GI25144678, Length=535, Percent_Identity=33.0841121495327, Blast_Score=281, Evalue=7e-76, Organism=Caenorhabditis elegans, GI17564182, Length=521, Percent_Identity=30.9021113243762, Blast_Score=278, Evalue=5e-75, Organism=Caenorhabditis elegans, GI25148561, Length=524, Percent_Identity=31.6793893129771, Blast_Score=276, Evalue=2e-74, Organism=Caenorhabditis elegans, GI25147750, Length=529, Percent_Identity=30.812854442344, Blast_Score=248, Evalue=5e-66, Organism=Caenorhabditis elegans, GI32566944, Length=439, Percent_Identity=29.3849658314351, Blast_Score=226, Evalue=3e-59, Organism=Caenorhabditis elegans, GI25144680, Length=394, Percent_Identity=33.502538071066, Blast_Score=222, Evalue=4e-58, Organism=Caenorhabditis elegans, GI71998178, Length=546, Percent_Identity=29.8534798534799, Blast_Score=213, Evalue=3e-55, Organism=Caenorhabditis elegans, GI71981457, Length=322, Percent_Identity=32.9192546583851, Blast_Score=173, Evalue=3e-43, Organism=Caenorhabditis elegans, GI17555558, Length=532, Percent_Identity=25, Blast_Score=88, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6322524, Length=542, Percent_Identity=33.9483394833948, Blast_Score=306, Evalue=5e-84, Organism=Saccharomyces cerevisiae, GI6320058, Length=513, Percent_Identity=34.1130604288499, Blast_Score=297, Evalue=3e-81, Organism=Saccharomyces cerevisiae, GI6320418, Length=528, Percent_Identity=34.469696969697, Blast_Score=294, Evalue=3e-80, Organism=Saccharomyces cerevisiae, GI6322446, Length=528, Percent_Identity=32.5757575757576, Blast_Score=293, Evalue=6e-80, Organism=Saccharomyces cerevisiae, GI6322350, Length=525, Percent_Identity=32.5714285714286, Blast_Score=291, Evalue=1e-79, Organism=Saccharomyces cerevisiae, GI6322049, Length=499, Percent_Identity=31.062124248497, Blast_Score=233, Evalue=4e-62, Organism=Saccharomyces cerevisiae, GI6320393, Length=540, Percent_Identity=27.7777777777778, Blast_Score=224, Evalue=2e-59, Organism=Saccharomyces cerevisiae, GI6322452, Length=530, Percent_Identity=27.1698113207547, Blast_Score=186, Evalue=6e-48, Organism=Saccharomyces cerevisiae, GI6323288, Length=124, Percent_Identity=32.258064516129, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI17647245, Length=530, Percent_Identity=34.3396226415094, Blast_Score=320, Evalue=1e-87, Organism=Drosophila melanogaster, GI24583944, Length=512, Percent_Identity=35.9375, Blast_Score=319, Evalue=3e-87, Organism=Drosophila melanogaster, GI24652903, Length=498, Percent_Identity=34.7389558232932, Blast_Score=307, Evalue=2e-83, Organism=Drosophila melanogaster, GI24649027, Length=545, Percent_Identity=33.9449541284404, Blast_Score=291, Evalue=7e-79, Organism=Drosophila melanogaster, GI24649029, Length=545, Percent_Identity=33.9449541284404, Blast_Score=291, Evalue=7e-79, Organism=Drosophila melanogaster, GI24647512, Length=534, Percent_Identity=32.9588014981273, Blast_Score=288, Evalue=6e-78, Organism=Drosophila melanogaster, GI24647510, Length=534, Percent_Identity=32.9588014981273, Blast_Score=288, Evalue=6e-78, Organism=Drosophila melanogaster, GI24645179, Length=524, Percent_Identity=32.6335877862595, Blast_Score=280, Evalue=1e-75, Organism=Drosophila melanogaster, GI18859933, Length=529, Percent_Identity=31.758034026465, Blast_Score=253, Evalue=3e-67, Organism=Drosophila melanogaster, GI18858175, Length=532, Percent_Identity=31.9548872180451, Blast_Score=248, Evalue=8e-66, Organism=Drosophila melanogaster, GI28571140, Length=526, Percent_Identity=32.1292775665399, Blast_Score=248, Evalue=1e-65, Organism=Drosophila melanogaster, GI19921848, Length=514, Percent_Identity=29.1828793774319, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI45550936, Length=539, Percent_Identity=23.3766233766234, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI45550132, Length=539, Percent_Identity=23.3766233766234, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI45550935, Length=539, Percent_Identity=23.3766233766234, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI24641193, Length=201, Percent_Identity=27.363184079602, Blast_Score=72, Evalue=8e-13, Organism=Drosophila melanogaster, GI24641191, Length=201, Percent_Identity=27.363184079602, Blast_Score=72, Evalue=8e-13,
Paralogues:
None
Copy number: 2180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 480 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 15012 Molecules/Cell In: Growth Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017998 - InterPro: IPR002194 - InterPro: IPR002423 - InterPro: IPR012714 [H]
Pfam domain/function: PF00118 Cpn60_TCP1 [H]
EC number: NA
Molecular weight: Translated: 60794; Mature: 60662
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: PS00750 TCP1_1 ; PS00751 TCP1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFALSVICPSIHTIISGGFVQMDKGGQPVFIIDPRKEQTKGRDALSMNIAAAKAVANIV CCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHH KSTLGPRGMDKMLVNPLGDITITNDGATILHDMDIEHPTAKMIVEVAQSLENSAGDGTTS HHHCCCCCCHHHHHCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCH AVVFTGALLEKAESLIEKGVHPAVVVKGYRLAAEKAVEVFEKLAVPAKERELLIKAARTS HHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ITGKASEKYSNLIAEICVDAVLAIHEDGKADLKHVILSKDVGGLVEDTEFVEGIVIDKVA CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH LDKKAPLKIVNPNIALIDAPMETAKTANKAKLQISTVSDIENFVKQEDAALFEMADYIIR CCCCCCEEEECCCEEEEECCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH AGANAVFCSKGMDDKVAAYLQNRGIYATRRVKNEDMQHLADATGGRPVRNIKELTEKELG CCCCEEEECCCCCHHHHHHHHCCCCEEEHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCC HAGLLEQDRDDEQGKTYLRDCKGAKSVSIVLRGGTEHVVDNLERAVDDALKVAKCVVEDG CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC MVVAGGGASEMEVALSLRSYASSVGGREQMAIAAFAEALEEIPRTIARNAGLDTINTIVN EEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LRAKHADNKNAGLNVLTGAAEDMLEKGIIDPLRVKVNSIKAGSEAATMVLRVDSMLRAQR HHHHCCCCCCCCCEEEECCHHHHHHHCCCCHHHEEEHHCCCCCHHHHHHHHHHHHHHHHH TDMQDVKPEHRASTYEGMSAPALNMHR CCHHHCCCHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure SFALSVICPSIHTIISGGFVQMDKGGQPVFIIDPRKEQTKGRDALSMNIAAAKAVANIV CCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHH KSTLGPRGMDKMLVNPLGDITITNDGATILHDMDIEHPTAKMIVEVAQSLENSAGDGTTS HHHCCCCCCHHHHHCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCH AVVFTGALLEKAESLIEKGVHPAVVVKGYRLAAEKAVEVFEKLAVPAKERELLIKAARTS HHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ITGKASEKYSNLIAEICVDAVLAIHEDGKADLKHVILSKDVGGLVEDTEFVEGIVIDKVA CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH LDKKAPLKIVNPNIALIDAPMETAKTANKAKLQISTVSDIENFVKQEDAALFEMADYIIR CCCCCCEEEECCCEEEEECCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH AGANAVFCSKGMDDKVAAYLQNRGIYATRRVKNEDMQHLADATGGRPVRNIKELTEKELG CCCCEEEECCCCCHHHHHHHHCCCCEEEHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCC HAGLLEQDRDDEQGKTYLRDCKGAKSVSIVLRGGTEHVVDNLERAVDDALKVAKCVVEDG CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC MVVAGGGASEMEVALSLRSYASSVGGREQMAIAAFAEALEEIPRTIARNAGLDTINTIVN EEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LRAKHADNKNAGLNVLTGAAEDMLEKGIIDPLRVKVNSIKAGSEAATMVLRVDSMLRAQR HHHHCCCCCCCCCEEEECCHHHHHHHCCCCHHHEEEHHCCCCCHHHHHHHHHHHHHHHHH TDMQDVKPEHRASTYEGMSAPALNMHR CCHHHCCCHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9774467 [H]