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The map label for this gene is ydeM [C]

Identifier: 20809086

GI number: 20809086

Start: 2646572

End: 2647402

Strand: Reverse

Name: ydeM [C]

Synonym: TTE2753

Alternate gene names: 20809086

Gene position: 2647402-2646572 (Counterclockwise)

Preceding gene: 20809088

Following gene: 20809085

Centisome position: 98.44

GC content: 32.13

Gene sequence:

>831_bases
TTGGATGCTCATTTAGCAGAAATAAATGACAAGTTACGCTGTTTTTATAATGGAAATGGAACTTTTACTCATGTGCGAAA
AGCAATAGAGATGTTTAGTGACTACGAGTGGCAGGGAGTTATAGTGACGATAACTAAAAACAATGTGAATATAATAGACA
CAATAGCTGAGGCATTATATAATTGGGGAGTACGTTCTGCTTTATTTAATCCTATATCACCATCGGTATCTGAAAATACT
GTTTTTGTGCCATCAATTAAGAAATTAATAGACAATTATAAGAAATTTATTGATGTAGTAATAAGACTAAATACCTACCA
ACCTAAAGGAAGGCGATTAGTGGTAGATAATATAGAATCATTGGTTTTAGCAATTTTTACTTCTAATATGCGAGGTATGT
ACTGCCATATGAGTCTTTGTGGAGCTGGGCGACTCTCTTACGTGATTACTTGGAATGGAGATGTATATCCTTGCTCTGAG
TTTGTACAATTTGAAGAGTTTAAATGTGGGAATATATTTGAAGATTCTATTGAAACTATCATAAATTCAGAGGCATGTAA
AAAGTTAAGACTTCGGAATGTTAATAAGATAGATACTTGTAATAATTGTCCATACAAACTTATATGTGGGGCTAATTGTC
CTGCTGCAGTATATGGATTATCAGGAACATTGCTGGGAAAATCTCCTTATTGTAAATTTAATTTTGAGATTATAAACTAT
CTTTTTGAAAAGATTTCAGAACATGGTATTGAAATAGCTTATAAACTGGTAAGTGAAGCGTTTGAAGAGAAAATAAAGAC
AAGAAAACCATTAGTATGGATTGAGAGGTAA

Upstream 100 bases:

>100_bases
GGAATTCCCTCTTGCAAAAAACATTCAGACAAACGGTACTTTATTAACTGAAGAAGATGCTGCCTTTATAAAAAAACATA
ATGTTCATATAAGTTTATCA

Downstream 100 bases:

>100_bases
AGAATATGAGAAAAACTTCTTATTTTTCTCTACTATGCAAAAGAAACATTGCTATTATGTTTTTATCTAACATGGCTATA
GGACTAATGGATGGGCCTAT

Product: Fe-S oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MDAHLAEINDKLRCFYNGNGTFTHVRKAIEMFSDYEWQGVIVTITKNNVNIIDTIAEALYNWGVRSALFNPISPSVSENT
VFVPSIKKLIDNYKKFIDVVIRLNTYQPKGRRLVVDNIESLVLAIFTSNMRGMYCHMSLCGAGRLSYVITWNGDVYPCSE
FVQFEEFKCGNIFEDSIETIINSEACKKLRLRNVNKIDTCNNCPYKLICGANCPAAVYGLSGTLLGKSPYCKFNFEIINY
LFEKISEHGIEIAYKLVSEAFEEKIKTRKPLVWIER

Sequences:

>Translated_276_residues
MDAHLAEINDKLRCFYNGNGTFTHVRKAIEMFSDYEWQGVIVTITKNNVNIIDTIAEALYNWGVRSALFNPISPSVSENT
VFVPSIKKLIDNYKKFIDVVIRLNTYQPKGRRLVVDNIESLVLAIFTSNMRGMYCHMSLCGAGRLSYVITWNGDVYPCSE
FVQFEEFKCGNIFEDSIETIINSEACKKLRLRNVNKIDTCNNCPYKLICGANCPAAVYGLSGTLLGKSPYCKFNFEIINY
LFEKISEHGIEIAYKLVSEAFEEKIKTRKPLVWIER
>Mature_276_residues
MDAHLAEINDKLRCFYNGNGTFTHVRKAIEMFSDYEWQGVIVTITKNNVNIIDTIAEALYNWGVRSALFNPISPSVSENT
VFVPSIKKLIDNYKKFIDVVIRLNTYQPKGRRLVVDNIESLVLAIFTSNMRGMYCHMSLCGAGRLSYVITWNGDVYPCSE
FVQFEEFKCGNIFEDSIETIINSEACKKLRLRNVNKIDTCNNCPYKLICGANCPAAVYGLSGTLLGKSPYCKFNFEIINY
LFEKISEHGIEIAYKLVSEAFEEKIKTRKPLVWIER

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 31545; Mature: 31545

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAHLAEINDKLRCFYNGNGTFTHVRKAIEMFSDYEWQGVIVTITKNNVNIIDTIAEALY
CCCCHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
NWGVRSALFNPISPSVSENTVFVPSIKKLIDNYKKFIDVVIRLNTYQPKGRRLVVDNIES
HCCHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHH
LVLAIFTSNMRGMYCHMSLCGAGRLSYVITWNGDVYPCSEFVQFEEFKCGNIFEDSIETI
HHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHH
INSEACKKLRLRNVNKIDTCNNCPYKLICGANCPAAVYGLSGTLLGKSPYCKFNFEIINY
HCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEECCEEEECCCCCEEEHHHHHHH
LFEKISEHGIEIAYKLVSEAFEEKIKTRKPLVWIER
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MDAHLAEINDKLRCFYNGNGTFTHVRKAIEMFSDYEWQGVIVTITKNNVNIIDTIAEALY
CCCCHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
NWGVRSALFNPISPSVSENTVFVPSIKKLIDNYKKFIDVVIRLNTYQPKGRRLVVDNIES
HCCHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHH
LVLAIFTSNMRGMYCHMSLCGAGRLSYVITWNGDVYPCSEFVQFEEFKCGNIFEDSIETI
HHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHH
INSEACKKLRLRNVNKIDTCNNCPYKLICGANCPAAVYGLSGTLLGKSPYCKFNFEIINY
HCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEECCEEEECCCCCEEEHHHHHHH
LFEKISEHGIEIAYKLVSEAFEEKIKTRKPLVWIER
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]