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The map label for this gene is NlpD6 [C]

Identifier: 20809035

GI number: 20809035

Start: 2586332

End: 2587681

Strand: Reverse

Name: NlpD6 [C]

Synonym: TTE2691

Alternate gene names: 20809035

Gene position: 2587681-2586332 (Counterclockwise)

Preceding gene: 20809038

Following gene: 20809034

Centisome position: 96.22

GC content: 39.7

Gene sequence:

>1350_bases
ATGGGGAAAGTGGGGAGCGAAAGCTATAAGTTTTTGCTCTTTTTAAAAGAGTACCAGAAAAACCTTATAGCTTTTTTATT
TGCCCTTTTTTTAGGACTGGCTTTTGTGGTATATGAAAATGGATTTGCCTATAACGTGCTGGTAGATGGAGTAAGTATTG
GCGTCACAAGAGATGTTGAAGGGGTAAAAAGGGTAGTAGAAGAAATCAAAAAAGAAGAGATGCAAAAATGGGGCGATGTG
GTCTTTGACCAAGAGATAAGCTTTGAAAGGATTAGGGTTTCAGGTGAAAGAGTCAAAGATGCTAGGGAAATAGAGGCTAG
CTTGAAAAAGATTCTGAGCCTTACCTGCAAGGCTTATGCCATAGAGGTCAATGGAAAGCCGGTTGCATTTTTAAAATCAA
AAGAAGAAGCTTACAAAACTCTAGAGGATTTAAAGAGCGAGTATAAAAAAGATGCAGACAAAATCTATTTTAAGGAAGAA
ATAAAGATAAAAAGTAAGTACATATCTCCTACAAAGTTGGTTGAGGAAAAAGAGGCTTTAGAAATATTGAGAAAGCCTCT
GAAAGAGGCAGTTACATATGAGGTAAAAGAAAATGACAGCCTCTGGAGTATAGCGAGAGAGCATGACATGTACATACAGG
ACATATTGAAGCTGAATCCTGGGCTTACTGAGAATTTAAAGCCTGGGCAGATTATATATCTTTCAAAAGAAGTCCCCTTG
GTCACAGTTGTTACAGAAAAAGAGGTAACTTACAAAGAAGAAATTCCTTTTAATACTAAATTTACAAAAGATGATAAACT
TTTTGTTAACCAATCAAAGGTTCTAGTGGAAGGGGAAAAGGGGTTAAAAGAGATAAAAGCGGTAGTGATAAGTCACAATG
GAGTTGAAGTAAAGAGGGATATAAAAGAAGAAAGAGTGCTAAAAGAGCCCATTTCTAAAATAGTAGCAGTTGGTTCAAGG
AGAGTCTCTTACGTAGCTACGGGCTATTTTAGCTATCCAGCGAGGGGTACTATAACCTCGAGATTTGGCCCTAGGTGGGG
AGGTTTTCACACAGGGGTTGATATAGCAGCACGATATGGGAGCCCGATTTATGCTTCAGATGGCGGAACAGTGATTTTTG
CCGGTTGGGAGAGCGGTTACGGATATCTTGTTAAGATTGACCATCACAATGGGTATGTGACCTATTACGGGCATGCCAGT
AAGCTTTTGGTGAAAGTGGGAGACAAAGTTGAAAAAGGGCAAAAAATCGCACTGGTAGGAGCGACAGGCCATGCTACAGG
GCCTCATGTGCATTTTGAGGTGAGAAAAAATGGCGTGCCAATTGACCCGATGCGCTTTTTAGGAAGATAA

Upstream 100 bases:

>100_bases
GAATATTAGTCTAAACTACAGCATAAAATATAAAGAAGGAAATAAAATTTTGCTTTTTGGAAAAAGTGTGGTATAATTAA
AACGATTAGATGAAGAAAGG

Downstream 100 bases:

>100_bases
GCCCGAATTGGGCTTTTTTCTTTTTGAATGAACTTGCCCCCTTTGGATATGAATGCTATAATACAAAATGAAAGGTATAA
ATATGGGCTGTATCACTCAC

Product: membrane proteins related to metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MGKVGSESYKFLLFLKEYQKNLIAFLFALFLGLAFVVYENGFAYNVLVDGVSIGVTRDVEGVKRVVEEIKKEEMQKWGDV
VFDQEISFERIRVSGERVKDAREIEASLKKILSLTCKAYAIEVNGKPVAFLKSKEEAYKTLEDLKSEYKKDADKIYFKEE
IKIKSKYISPTKLVEEKEALEILRKPLKEAVTYEVKENDSLWSIAREHDMYIQDILKLNPGLTENLKPGQIIYLSKEVPL
VTVVTEKEVTYKEEIPFNTKFTKDDKLFVNQSKVLVEGEKGLKEIKAVVISHNGVEVKRDIKEERVLKEPISKIVAVGSR
RVSYVATGYFSYPARGTITSRFGPRWGGFHTGVDIAARYGSPIYASDGGTVIFAGWESGYGYLVKIDHHNGYVTYYGHAS
KLLVKVGDKVEKGQKIALVGATGHATGPHVHFEVRKNGVPIDPMRFLGR

Sequences:

>Translated_449_residues
MGKVGSESYKFLLFLKEYQKNLIAFLFALFLGLAFVVYENGFAYNVLVDGVSIGVTRDVEGVKRVVEEIKKEEMQKWGDV
VFDQEISFERIRVSGERVKDAREIEASLKKILSLTCKAYAIEVNGKPVAFLKSKEEAYKTLEDLKSEYKKDADKIYFKEE
IKIKSKYISPTKLVEEKEALEILRKPLKEAVTYEVKENDSLWSIAREHDMYIQDILKLNPGLTENLKPGQIIYLSKEVPL
VTVVTEKEVTYKEEIPFNTKFTKDDKLFVNQSKVLVEGEKGLKEIKAVVISHNGVEVKRDIKEERVLKEPISKIVAVGSR
RVSYVATGYFSYPARGTITSRFGPRWGGFHTGVDIAARYGSPIYASDGGTVIFAGWESGYGYLVKIDHHNGYVTYYGHAS
KLLVKVGDKVEKGQKIALVGATGHATGPHVHFEVRKNGVPIDPMRFLGR
>Mature_448_residues
GKVGSESYKFLLFLKEYQKNLIAFLFALFLGLAFVVYENGFAYNVLVDGVSIGVTRDVEGVKRVVEEIKKEEMQKWGDVV
FDQEISFERIRVSGERVKDAREIEASLKKILSLTCKAYAIEVNGKPVAFLKSKEEAYKTLEDLKSEYKKDADKIYFKEEI
KIKSKYISPTKLVEEKEALEILRKPLKEAVTYEVKENDSLWSIAREHDMYIQDILKLNPGLTENLKPGQIIYLSKEVPLV
TVVTEKEVTYKEEIPFNTKFTKDDKLFVNQSKVLVEGEKGLKEIKAVVISHNGVEVKRDIKEERVLKEPISKIVAVGSRR
VSYVATGYFSYPARGTITSRFGPRWGGFHTGVDIAARYGSPIYASDGGTVIFAGWESGYGYLVKIDHHNGYVTYYGHASK
LLVKVGDKVEKGQKIALVGATGHATGPHVHFEVRKNGVPIDPMRFLGR

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=194, Percent_Identity=31.4432989690722, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87082297, Length=128, Percent_Identity=37.5, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87082174, Length=101, Percent_Identity=42.5742574257426, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=37.8151260504202, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 50732; Mature: 50601

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS51109 G5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVGSESYKFLLFLKEYQKNLIAFLFALFLGLAFVVYENGFAYNVLVDGVSIGVTRDVE
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECEEECEECCHH
GVKRVVEEIKKEEMQKWGDVVFDQEISFERIRVSGERVKDAREIEASLKKILSLTCKAYA
HHHHHHHHHHHHHHHHHCCEEECCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHEEEEEE
IEVNGKPVAFLKSKEEAYKTLEDLKSEYKKDADKIYFKEEIKIKSKYISPTKLVEEKEAL
EEECCCEEEEECCHHHHHHHHHHHHHHHHCCHHHEEEEHHEEEEHHCCCHHHHHHHHHHH
EILRKPLKEAVTYEVKENDSLWSIAREHDMYIQDILKLNPGLTENLKPGQIIYLSKEVPL
HHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCE
VTVVTEKEVTYKEEIPFNTKFTKDDKLFVNQSKVLVEGEKGLKEIKAVVISHNGVEVKRD
EEEEECCCCCCHHCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHEEEEECCCCCHHHH
IKEERVLKEPISKIVAVGSRRVSYVATGYFSYPARGTITSRFGPRWGGFHTGVDIAARYG
HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCEECCCCCCCCCCCCCHHHHHHCC
SPIYASDGGTVIFAGWESGYGYLVKIDHHNGYVTYYGHASKLLVKVGDKVEKGQKIALVG
CCEEECCCCEEEEEEECCCCEEEEEEECCCCEEEEECCHHEEHHHHCCCCCCCCEEEEEE
ATGHATGPHVHFEVRKNGVPIDPMRFLGR
ECCCCCCCEEEEEEECCCCCCCHHHHHCC
>Mature Secondary Structure 
GKVGSESYKFLLFLKEYQKNLIAFLFALFLGLAFVVYENGFAYNVLVDGVSIGVTRDVE
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECEEECEECCHH
GVKRVVEEIKKEEMQKWGDVVFDQEISFERIRVSGERVKDAREIEASLKKILSLTCKAYA
HHHHHHHHHHHHHHHHHCCEEECCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHEEEEEE
IEVNGKPVAFLKSKEEAYKTLEDLKSEYKKDADKIYFKEEIKIKSKYISPTKLVEEKEAL
EEECCCEEEEECCHHHHHHHHHHHHHHHHCCHHHEEEEHHEEEEHHCCCHHHHHHHHHHH
EILRKPLKEAVTYEVKENDSLWSIAREHDMYIQDILKLNPGLTENLKPGQIIYLSKEVPL
HHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCE
VTVVTEKEVTYKEEIPFNTKFTKDDKLFVNQSKVLVEGEKGLKEIKAVVISHNGVEVKRD
EEEEECCCCCCHHCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHEEEEECCCCCHHHH
IKEERVLKEPISKIVAVGSRRVSYVATGYFSYPARGTITSRFGPRWGGFHTGVDIAARYG
HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCEECCCCCCCCCCCCCHHHHHHCC
SPIYASDGGTVIFAGWESGYGYLVKIDHHNGYVTYYGHASKLLVKVGDKVEKGQKIALVG
CCEEECCCCEEEEEEECCCCEEEEEEECCCCEEEEECCHHEEHHHHCCCCCCCCEEEEEE
ATGHATGPHVHFEVRKNGVPIDPMRFLGR
ECCCCCCCEEEEEEECCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]