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The map label for this gene is GlpR2 [H]

Identifier: 20808937

GI number: 20808937

Start: 2473348

End: 2474154

Strand: Reverse

Name: GlpR2 [H]

Synonym: TTE2588

Alternate gene names: 20808937

Gene position: 2474154-2473348 (Counterclockwise)

Preceding gene: 20808938

Following gene: 20808936

Centisome position: 91.99

GC content: 37.55

Gene sequence:

>807_bases
ATGTTTGGAGAGGAAAGGCGCTTAAAGATTGCAGAGATTATAAGTAAGGATAAAAGTATCAGTGTTTCTGAGCTTAGCAA
ACTCTTTAATGTTTCTGAGTCTACAATAAGAAGAGATTTGCATGTGCTGGAGGAAAAGGGTTTCATACAGAGGACTCACG
GTGGAGCTATTTTAAAGACTGGAACTCACTATGAGCCAGCCTTTTTTGAAAAGGAAGAGGTGGAGCTTGAGGCAAAGAGA
AAGATAGGTAGAATTGCTGCATCTCTCATTGAAGAAGGGGATACTATTCTTTTGGATTCAGGTACTACTACTCTGGAAAT
TGCGAGAAATTTAAAAAATATGAGGCTTACTGTTGTCACCAATTCTCCTTTAATTGCAATTGAGCTTTCAAAGTATGAAG
ATATTGAATTAATCGTCACAGGCGGCATACAGAGGTGGAGGACTAAAGCTTTAGTTGGCCCTATTGCAGAGATGGTAATA
AGGCAGTTTAAAGTGGATAAGGCCTTTATTGGGACGAATGCCATATCTTTTGAGGATGGACTTATGACTCCTGATTTGAT
TGAGGCAAATACTAAAAAGACGATGATAGAGGTAGCAAGCGAAGTATATGTAGTGGCAGACCACACTAAGTTTGGCAAAA
AATCTTTTGTAAAATTTGCAGATCTAAAAGACATTACGGCAATAATAACTGATGATGAGATAGATTATGAGGTTGTGAAA
AAGTATGAACAGGCAAATGTAGAGATACTAAATTTTGAAAGGGATGAAGATGATGATAACAACAGTGACAGCAAATCCAG
CAATTGA

Upstream 100 bases:

>100_bases
AATCAAAATCGGTATTATATAATCAAAATTAAGCAAAATCATTCATATTTGAGCGGGCTAAATTGAATGGATGTGAATGA
ATATGGGTGTATCTGATAGG

Downstream 100 bases:

>100_bases
TAGGACAGTGATTGTCGAAAATTTAAGGCTTGGCAGTGTCAATAGGGTGATTCGTTCAAGAGTTGACGCTGGAGGAAAGG
GGATAAATGTAGCCAAAAAC

Product: sugar metabolism transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MFGEERRLKIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILKTGTHYEPAFFEKEEVELEAKR
KIGRIAASLIEEGDTILLDSGTTTLEIARNLKNMRLTVVTNSPLIAIELSKYEDIELIVTGGIQRWRTKALVGPIAEMVI
RQFKVDKAFIGTNAISFEDGLMTPDLIEANTKKTMIEVASEVYVVADHTKFGKKSFVKFADLKDITAIITDDEIDYEVVK
KYEQANVEILNFERDEDDDNNSDSKSSN

Sequences:

>Translated_268_residues
MFGEERRLKIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILKTGTHYEPAFFEKEEVELEAKR
KIGRIAASLIEEGDTILLDSGTTTLEIARNLKNMRLTVVTNSPLIAIELSKYEDIELIVTGGIQRWRTKALVGPIAEMVI
RQFKVDKAFIGTNAISFEDGLMTPDLIEANTKKTMIEVASEVYVVADHTKFGKKSFVKFADLKDITAIITDDEIDYEVVK
KYEQANVEILNFERDEDDDNNSDSKSSN
>Mature_268_residues
MFGEERRLKIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILKTGTHYEPAFFEKEEVELEAKR
KIGRIAASLIEEGDTILLDSGTTTLEIARNLKNMRLTVVTNSPLIAIELSKYEDIELIVTGGIQRWRTKALVGPIAEMVI
RQFKVDKAFIGTNAISFEDGLMTPDLIEANTKKTMIEVASEVYVVADHTKFGKKSFVKFADLKDITAIITDDEIDYEVVK
KYEQANVEILNFERDEDDDNNSDSKSSN

Specific function: Probable Repressor For The Aga Operon For N-Acetyl Galactosamine Transport And Metabolism. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=249, Percent_Identity=35.7429718875502, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788069, Length=252, Percent_Identity=35.3174603174603, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI87082344, Length=256, Percent_Identity=31.640625, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI226510968, Length=233, Percent_Identity=35.6223175965665, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=32.1138211382114, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1789059, Length=252, Percent_Identity=32.1428571428571, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1790753, Length=245, Percent_Identity=29.7959183673469, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787540, Length=246, Percent_Identity=28.8617886178862, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789170, Length=229, Percent_Identity=29.6943231441048, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787063, Length=252, Percent_Identity=25.7936507936508, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790635, Length=249, Percent_Identity=21.6867469879518, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30210; Mature: 30210

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGEERRLKIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILKT
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
GTHYEPAFFEKEEVELEAKRKIGRIAASLIEEGDTILLDSGTTTLEIARNLKNMRLTVVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEEEE
NSPLIAIELSKYEDIELIVTGGIQRWRTKALVGPIAEMVIRQFKVDKAFIGTNAISFEDG
CCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCEECCCC
LMTPDLIEANTKKTMIEVASEVYVVADHTKFGKKSFVKFADLKDITAIITDDEIDYEVVK
CCCCHHHCCCCHHHHHHHHHCEEEEECCCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHH
KYEQANVEILNFERDEDDDNNSDSKSSN
HHHHCCEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MFGEERRLKIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILKT
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
GTHYEPAFFEKEEVELEAKRKIGRIAASLIEEGDTILLDSGTTTLEIARNLKNMRLTVVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEEEE
NSPLIAIELSKYEDIELIVTGGIQRWRTKALVGPIAEMVIRQFKVDKAFIGTNAISFEDG
CCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCEECCCC
LMTPDLIEANTKKTMIEVASEVYVVADHTKFGKKSFVKFADLKDITAIITDDEIDYEVVK
CCCCHHHCCCCHHHHHHHHHCEEEEECCCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHH
KYEQANVEILNFERDEDDDNNSDSKSSN
HHHHCCEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]