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The map label for this gene is yabO [H]

Identifier: 20808809

GI number: 20808809

Start: 2340481

End: 2340735

Strand: Reverse

Name: yabO [H]

Synonym: TTE2452

Alternate gene names: 20808809

Gene position: 2340735-2340481 (Counterclockwise)

Preceding gene: 20808810

Following gene: 20808808

Centisome position: 87.03

GC content: 38.43

Gene sequence:

>255_bases
GTGGAAATTTTGAGAGTGGACAAATTTTTGAAAGTTTCAAGGCTTATAAAAAGGCGCACAGTGGCAAAGGAGGCTTGTGA
TAAAGGGCTTGTTTTTATAAACGGCAAGCAGGCGAAAGGAAGTGACCAGGTGAAAGAAGGAGATATTTTGGAACTGCATC
TGGGAGATAGGGTAGTGAAAGTAGAGGTTTTAAAAGTAAAAGAGCATGTATTGAAAGAAGAGTCTTCTGATATGTATAAA
GTGTTAGAGGAATGA

Upstream 100 bases:

>100_bases
AAGCTCCTATCTTCAAGGCTGGAAAGGCTTTAAAGGATTTGGTGAATTCTTAAAAAGAAAATCAGGTCGGTTTCGACCTG
ATTTTCTTACTTTTAAGGAG

Downstream 100 bases:

>100_bases
ATTATTTAACAAAATCCCTCAAATACTATTAATAAAAGTATCTGGGAGGGATTTTGTTTGAATAAATTTAGAAAAATTTT
GGCTGTTTTTCTTGCAATAA

Product: ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MEILRVDKFLKVSRLIKRRTVAKEACDKGLVFINGKQAKGSDQVKEGDILELHLGDRVVKVEVLKVKEHVLKEESSDMYK
VLEE

Sequences:

>Translated_84_residues
MEILRVDKFLKVSRLIKRRTVAKEACDKGLVFINGKQAKGSDQVKEGDILELHLGDRVVKVEVLKVKEHVLKEESSDMYK
VLEE
>Mature_84_residues
MEILRVDKFLKVSRLIKRRTVAKEACDKGLVFINGKQAKGSDQVKEGDILELHLGDRVVKVEVLKVKEHVLKEESSDMYK
VLEE

Specific function: Unknown

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 9636; Mature: 9636

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILRVDKFLKVSRLIKRRTVAKEACDKGLVFINGKQAKGSDQVKEGDILELHLGDRVVK
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCEEEE
VEVLKVKEHVLKEESSDMYKVLEE
HHHHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MEILRVDKFLKVSRLIKRRTVAKEACDKGLVFINGKQAKGSDQVKEGDILELHLGDRVVK
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCEEEE
VEVLKVKEHVLKEESSDMYKVLEE
HHHHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]