Click here to switch to the map view.

The map label for this gene is NlpD5 [H]

Identifier: 20808489

GI number: 20808489

Start: 2017020

End: 2018735

Strand: Reverse

Name: NlpD5 [H]

Synonym: TTE2092

Alternate gene names: 20808489

Gene position: 2018735-2017020 (Counterclockwise)

Preceding gene: 20808490

Following gene: 20808488

Centisome position: 75.06

GC content: 39.57

Gene sequence:

>1716_bases
GTGATTGTGTTGGGTGAGTATTTAAAGAATTATCTAAAAAGAGCTGCAAAAAGACGTATACTTCATTTTCTTGTAAGAAA
CCCTTATTTTTGGATGGTAGCAGGCTTTTTAATTCTTATTTCTTTCGGCGTAATTATCACTTTGGGGATTTTTGGTGCTG
CATATGGAGATGATACTATTTCAGCCAATACCCAAACAGCCAAAAATATAGTATCTTCTTTAAATCCCCCTGTTATATCT
TCTGATAAAATGGAAGAGCAGTTTTTTCTTCCATGGGCAGTACCTTATGCTCTTCAGCTTTATGCAAGGGACTGGGATGA
CACTCTTGATAAGGACATGGTAGCGAACATAACCAAAGACCTTAATCCTGTTTTTACGTACTTTGATTATGATGAAGTAA
CTCAGGTTTGGGAAAGTGTTAAGGATAAAGATGGGAACTGGCAGACAAAGTATTACGAAATAAGAACACCAAGAAAGTAT
ATCTCTCAAGTGAATACCTATGCAGGAATATATGTAATACATTACAAAGAATTTACCAGTGAAAACTTTACAAAAGGAAC
AGATTACAGTAAACACACAATAACTCATTATATAGCAAAAACAGGAATAGATTTCTACCCCGACTGGACAAGGCTGGATG
CTGCAATTACAAAATATGCTTATGTTAACACCACAACAAACAACTTCAATGTACAGGAATTTCCTGTTAAGGGCGGAAAG
ATAATAAAGCCTTTTGATGGGAACTATCCTGTAACATCACCTTTTGGCATGAGAGAGAATCCTGAAAATCCTGGCAGCAG
GGAATTTCATCCGGGAATAGACTTTGGACTTCCTTCCGGAACACCTGTAAAAGCAGCAGCTGATGGTGTTGTCGTTCTTG
CCGGAGAATACGGAGGATACGGAAAAGCAGTTATCATAAAGCATACAGACGGCCTGTCAACGGTTTATGGGCATCTTTCC
GAAATAAAAGTGGGAGAAGGGAAAGAAGTGAAGCAGGGAGAAGTTATAGGCTTGTCTGGAAATACGGGACGCTCAACAGG
TTCACACCTTCATTTTGAAATAAGGAAAGACAGCCAGCCTGTTGATCCACTACAGTACCTTTCCGGTACTCTGGTGCTGT
CAGATGGAACAGTTTACTATGTTTCAGAAATTGACAGAAAAATGCTTTTAGAAACTGCAGCTTCGTTTATGGAAAACAAA
GAAAGCATTGATTGGCTGCTTGATAGTTCAGACTACTCAATGGGGGAAGGGGTACCTCCATGGCAGAAATATGATGTAAA
GCCGGGTGAAATACCAAACGAACTGATTCCTGTGTTTAAAACAGCCGGAGAAAAATACGGAATACCATGGACTGTACTTG
CAGCAGTAGCTTACAGAGAATCAAGCTTTAATCCAAACGCTGTTGGACCTTATCTGCCTGACTACAATACATCTGCTGTT
GGAATGATGCAGTTTTTACCCGAAACGTTCAGTGAGTATGGTGTTGACGGCAATGGTGACGGCATAATAAGCCCTTTTGA
TCCTTCCGATGCAGTTTACACCGCTGCACACTACTTAAGTGCAAATTACAACCTGTACAAGAAAAAAGGCTACAGTGATA
TAGACGCATTAAGAAAGGCTGTATGGCACTACAACCACGCATGGTGGTACGTGGATCAGGTAATGTCAATTGCTGAAAAG
TACAAAGAAAGATATATTGACAATATTAATAAATAG

Upstream 100 bases:

>100_bases
TATAAGAAAAGGTTATGAATGGATTAAAAATGTGTCAAAAAACCCTGATGAATTCAGATGGAAGTAGCAGGGGAATATTT
CCTCTGCTATTTTTGTTGGG

Downstream 100 bases:

>100_bases
GTGTATAATCTATGTAAGAAGTTAGAAAAAATTTTGCAAGAAAGCCGGTGTTTTGTATGAGGAGAACCAATTTGTTTGAT
AATTTGATGTTTATAGTAAC

Product: membrane proteins related to metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MIVLGEYLKNYLKRAAKRRILHFLVRNPYFWMVAGFLILISFGVIITLGIFGAAYGDDTISANTQTAKNIVSSLNPPVIS
SDKMEEQFFLPWAVPYALQLYARDWDDTLDKDMVANITKDLNPVFTYFDYDEVTQVWESVKDKDGNWQTKYYEIRTPRKY
ISQVNTYAGIYVIHYKEFTSENFTKGTDYSKHTITHYIAKTGIDFYPDWTRLDAAITKYAYVNTTTNNFNVQEFPVKGGK
IIKPFDGNYPVTSPFGMRENPENPGSREFHPGIDFGLPSGTPVKAAADGVVVLAGEYGGYGKAVIIKHTDGLSTVYGHLS
EIKVGEGKEVKQGEVIGLSGNTGRSTGSHLHFEIRKDSQPVDPLQYLSGTLVLSDGTVYYVSEIDRKMLLETAASFMENK
ESIDWLLDSSDYSMGEGVPPWQKYDVKPGEIPNELIPVFKTAGEKYGIPWTVLAAVAYRESSFNPNAVGPYLPDYNTSAV
GMMQFLPETFSEYGVDGNGDGIISPFDPSDAVYTAAHYLSANYNLYKKKGYSDIDALRKAVWHYNHAWWYVDQVMSIAEK
YKERYIDNINK

Sequences:

>Translated_571_residues
MIVLGEYLKNYLKRAAKRRILHFLVRNPYFWMVAGFLILISFGVIITLGIFGAAYGDDTISANTQTAKNIVSSLNPPVIS
SDKMEEQFFLPWAVPYALQLYARDWDDTLDKDMVANITKDLNPVFTYFDYDEVTQVWESVKDKDGNWQTKYYEIRTPRKY
ISQVNTYAGIYVIHYKEFTSENFTKGTDYSKHTITHYIAKTGIDFYPDWTRLDAAITKYAYVNTTTNNFNVQEFPVKGGK
IIKPFDGNYPVTSPFGMRENPENPGSREFHPGIDFGLPSGTPVKAAADGVVVLAGEYGGYGKAVIIKHTDGLSTVYGHLS
EIKVGEGKEVKQGEVIGLSGNTGRSTGSHLHFEIRKDSQPVDPLQYLSGTLVLSDGTVYYVSEIDRKMLLETAASFMENK
ESIDWLLDSSDYSMGEGVPPWQKYDVKPGEIPNELIPVFKTAGEKYGIPWTVLAAVAYRESSFNPNAVGPYLPDYNTSAV
GMMQFLPETFSEYGVDGNGDGIISPFDPSDAVYTAAHYLSANYNLYKKKGYSDIDALRKAVWHYNHAWWYVDQVMSIAEK
YKERYIDNINK
>Mature_571_residues
MIVLGEYLKNYLKRAAKRRILHFLVRNPYFWMVAGFLILISFGVIITLGIFGAAYGDDTISANTQTAKNIVSSLNPPVIS
SDKMEEQFFLPWAVPYALQLYARDWDDTLDKDMVANITKDLNPVFTYFDYDEVTQVWESVKDKDGNWQTKYYEIRTPRKY
ISQVNTYAGIYVIHYKEFTSENFTKGTDYSKHTITHYIAKTGIDFYPDWTRLDAAITKYAYVNTTTNNFNVQEFPVKGGK
IIKPFDGNYPVTSPFGMRENPENPGSREFHPGIDFGLPSGTPVKAAADGVVVLAGEYGGYGKAVIIKHTDGLSTVYGHLS
EIKVGEGKEVKQGEVIGLSGNTGRSTGSHLHFEIRKDSQPVDPLQYLSGTLVLSDGTVYYVSEIDRKMLLETAASFMENK
ESIDWLLDSSDYSMGEGVPPWQKYDVKPGEIPNELIPVFKTAGEKYGIPWTVLAAVAYRESSFNPNAVGPYLPDYNTSAV
GMMQFLPETFSEYGVDGNGDGIISPFDPSDAVYTAAHYLSANYNLYKKKGYSDIDALRKAVWHYNHAWWYVDQVMSIAEK
YKERYIDNINK

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=121, Percent_Identity=43.801652892562, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789099, Length=97, Percent_Identity=45.360824742268, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=41.2371134020619, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87082297, Length=92, Percent_Identity=40.2173913043478, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 64399; Mature: 64399

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLGEYLKNYLKRAAKRRILHFLVRNPYFWMVAGFLILISFGVIITLGIFGAAYGDDTI
CEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SANTQTAKNIVSSLNPPVISSDKMEEQFFLPWAVPYALQLYARDWDDTLDKDMVANITKD
CCCHHHHHHHHHHCCCCCCCCCCCCHHEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHC
LNPVFTYFDYDEVTQVWESVKDKDGNWQTKYYEIRTPRKYISQVNTYAGIYVIHYKEFTS
CCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEECCC
ENFTKGTDYSKHTITHYIAKTGIDFYPDWTRLDAAITKYAYVNTTTNNFNVQEFPVKGGK
CCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEEECCCCCCEEEECCCCCE
IIKPFDGNYPVTSPFGMRENPENPGSREFHPGIDFGLPSGTPVKAAADGVVVLAGEYGGY
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
GKAVIIKHTDGLSTVYGHLSEIKVGEGKEVKQGEVIGLSGNTGRSTGSHLHFEIRKDSQP
CCEEEEEECCCHHHHHHHHHHEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCC
VDPLQYLSGTLVLSDGTVYYVSEIDRKMLLETAASFMENKESIDWLLDSSDYSMGEGVPP
CCHHHHCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCC
WQKYDVKPGEIPNELIPVFKTAGEKYGIPWTVLAAVAYRESSFNPNAVGPYLPDYNTSAV
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
GMMQFLPETFSEYGVDGNGDGIISPFDPSDAVYTAAHYLSANYNLYKKKGYSDIDALRKA
HHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
VWHYNHAWWYVDQVMSIAEKYKERYIDNINK
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIVLGEYLKNYLKRAAKRRILHFLVRNPYFWMVAGFLILISFGVIITLGIFGAAYGDDTI
CEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SANTQTAKNIVSSLNPPVISSDKMEEQFFLPWAVPYALQLYARDWDDTLDKDMVANITKD
CCCHHHHHHHHHHCCCCCCCCCCCCHHEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHC
LNPVFTYFDYDEVTQVWESVKDKDGNWQTKYYEIRTPRKYISQVNTYAGIYVIHYKEFTS
CCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEECCC
ENFTKGTDYSKHTITHYIAKTGIDFYPDWTRLDAAITKYAYVNTTTNNFNVQEFPVKGGK
CCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEEECCCCCCEEEECCCCCE
IIKPFDGNYPVTSPFGMRENPENPGSREFHPGIDFGLPSGTPVKAAADGVVVLAGEYGGY
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
GKAVIIKHTDGLSTVYGHLSEIKVGEGKEVKQGEVIGLSGNTGRSTGSHLHFEIRKDSQP
CCEEEEEECCCHHHHHHHHHHEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCC
VDPLQYLSGTLVLSDGTVYYVSEIDRKMLLETAASFMENKESIDWLLDSSDYSMGEGVPP
CCHHHHCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCC
WQKYDVKPGEIPNELIPVFKTAGEKYGIPWTVLAAVAYRESSFNPNAVGPYLPDYNTSAV
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
GMMQFLPETFSEYGVDGNGDGIISPFDPSDAVYTAAHYLSANYNLYKKKGYSDIDALRKA
HHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
VWHYNHAWWYVDQVMSIAEKYKERYIDNINK
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]