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The map label for this gene is DppB5 [H]

Identifier: 20808319

GI number: 20808319

Start: 1850571

End: 1851581

Strand: Reverse

Name: DppB5 [H]

Synonym: TTE1914

Alternate gene names: 20808319

Gene position: 1851581-1850571 (Counterclockwise)

Preceding gene: 20808320

Following gene: 20808318

Centisome position: 68.85

GC content: 39.17

Gene sequence:

>1011_bases
ATGAGGGAAGCGAAGGTTTTAAAGAGAGTTTTGTACACAATTCCTATAATGCTAGCAATAGCCATAACAGTATTTGTATT
TATGAGATTTACTCCGGGAGACCCCGTTGACATAATGATGGGAAAAGAAAGCATGGTATCACAGCAGGACATAGAGCTTT
TAAAAAAGGAGTTTAACCTTGATAAACCTATATACACACAGCTTTACATTTTCCTCACAAATCTTTTAAAGGGAGATTTG
GGAAAGTCTATAACAAAAGGAGTTCCTGTAATTGAACTTATCAGAGAGACTCTACCTGCTACAATTGAACTTGCTCTGGC
AGCCTTAACTCTTGGGATTTTAATAGGTATCCCCATAGGGATTATATCTGCTGTCAAACAGAATTCCTGGCTTGACAGAA
CTATGATGGCAATCTCTTTTACAGGAATATCAATGCCTTCTTTCTGGCTGGGATTAATACTTATTCTAATTTTTTCAGCC
AAATTAAATTTACTTCCGAGTCAGGGCAGAATAAATTTTCTAATTTATATACCTAAGGTAACTGGTTTTTACACGATTGA
TTCGCTTCTTGCTGGAGACTGGGAAGCATTTGTGAGCAGTTTGAGGCATCTTTTCTTGCCTGCTCTAACTTTATCAGCTC
CTTTAGCAGCTGTTTTGGCAAGAGTTATGAGGTCCAGTATGCTGGAGGTCTTAAGAAATGACTATGTGGTCTTCGCAAGG
GCTAAGGGAGTGCCTGAGAAATTAGTAATACTTAAGCATGCTGTAAGAAACGCATTGATTCCAACAGTTACAGTTTTAGG
CATGGAAGTAGGAGCACTTTTAGGGGGAAATATGATAGTTGAGAATGTCTTTGGATGGCCTGGAATAGGCAGGCTTGTTG
TGACTGCGATATTTGACAGGGATTATCCTCTGGTCCAGGGAGTCGTAATGTTTTACGCCTTCACTTTTGTCATGGCAAAT
CTTTTGGTAGATATACTCTACACTTATCTGGACCCCAAGATTGAACTGTAG

Upstream 100 bases:

>100_bases
GAGTATGGACGGTAGAGAAAATATGCACAGAGTGAAGCTTTCTAATGAGTAAAAAGGGGTTAATGACCCTTTTTACTCTA
AAGTGGATGGGGGAATTTTT

Downstream 100 bases:

>100_bases
GGGGTGTTTGAATGACTATAAAAAATGGAATAGTGCCTGCAAAGTATTATGAAGTATCTTATAAAAAATCAAATTTAATA
ACTAACCTTTTAAGCCTTTT

Product: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MREAKVLKRVLYTIPIMLAIAITVFVFMRFTPGDPVDIMMGKESMVSQQDIELLKKEFNLDKPIYTQLYIFLTNLLKGDL
GKSITKGVPVIELIRETLPATIELALAALTLGILIGIPIGIISAVKQNSWLDRTMMAISFTGISMPSFWLGLILILIFSA
KLNLLPSQGRINFLIYIPKVTGFYTIDSLLAGDWEAFVSSLRHLFLPALTLSAPLAAVLARVMRSSMLEVLRNDYVVFAR
AKGVPEKLVILKHAVRNALIPTVTVLGMEVGALLGGNMIVENVFGWPGIGRLVVTAIFDRDYPLVQGVVMFYAFTFVMAN
LLVDILYTYLDPKIEL

Sequences:

>Translated_336_residues
MREAKVLKRVLYTIPIMLAIAITVFVFMRFTPGDPVDIMMGKESMVSQQDIELLKKEFNLDKPIYTQLYIFLTNLLKGDL
GKSITKGVPVIELIRETLPATIELALAALTLGILIGIPIGIISAVKQNSWLDRTMMAISFTGISMPSFWLGLILILIFSA
KLNLLPSQGRINFLIYIPKVTGFYTIDSLLAGDWEAFVSSLRHLFLPALTLSAPLAAVLARVMRSSMLEVLRNDYVVFAR
AKGVPEKLVILKHAVRNALIPTVTVLGMEVGALLGGNMIVENVFGWPGIGRLVVTAIFDRDYPLVQGVVMFYAFTFVMAN
LLVDILYTYLDPKIEL
>Mature_336_residues
MREAKVLKRVLYTIPIMLAIAITVFVFMRFTPGDPVDIMMGKESMVSQQDIELLKKEFNLDKPIYTQLYIFLTNLLKGDL
GKSITKGVPVIELIRETLPATIELALAALTLGILIGIPIGIISAVKQNSWLDRTMMAISFTGISMPSFWLGLILILIFSA
KLNLLPSQGRINFLIYIPKVTGFYTIDSLLAGDWEAFVSSLRHLFLPALTLSAPLAAVLARVMRSSMLEVLRNDYVVFAR
AKGVPEKLVILKHAVRNALIPTVTVLGMEVGALLGGNMIVENVFGWPGIGRLVVTAIFDRDYPLVQGVVMFYAFTFVMAN
LLVDILYTYLDPKIEL

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=333, Percent_Identity=40.5405405405405, Blast_Score=268, Evalue=3e-73,
Organism=Escherichia coli, GI1787053, Length=330, Percent_Identity=39.3939393939394, Blast_Score=257, Evalue=8e-70,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=43.9024390243902, Blast_Score=251, Evalue=6e-68,
Organism=Escherichia coli, GI1789888, Length=331, Percent_Identity=36.2537764350453, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1787497, Length=331, Percent_Identity=32.02416918429, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=34.5588235294118, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1788504, Length=373, Percent_Identity=27.3458445040214, Blast_Score=133, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37298; Mature: 37298

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREAKVLKRVLYTIPIMLAIAITVFVFMRFTPGDPVDIMMGKESMVSQQDIELLKKEFNL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCC
DKPIYTQLYIFLTNLLKGDLGKSITKGVPVIELIRETLPATIELALAALTLGILIGIPIG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IISAVKQNSWLDRTMMAISFTGISMPSFWLGLILILIFSAKLNLLPSQGRINFLIYIPKV
HHHHHHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
TGFYTIDSLLAGDWEAFVSSLRHLFLPALTLSAPLAAVLARVMRSSMLEVLRNDYVVFAR
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
AKGVPEKLVILKHAVRNALIPTVTVLGMEVGALLGGNMIVENVFGWPGIGRLVVTAIFDR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCC
DYPLVQGVVMFYAFTFVMANLLVDILYTYLDPKIEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MREAKVLKRVLYTIPIMLAIAITVFVFMRFTPGDPVDIMMGKESMVSQQDIELLKKEFNL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCC
DKPIYTQLYIFLTNLLKGDLGKSITKGVPVIELIRETLPATIELALAALTLGILIGIPIG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IISAVKQNSWLDRTMMAISFTGISMPSFWLGLILILIFSAKLNLLPSQGRINFLIYIPKV
HHHHHHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
TGFYTIDSLLAGDWEAFVSSLRHLFLPALTLSAPLAAVLARVMRSSMLEVLRNDYVVFAR
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
AKGVPEKLVILKHAVRNALIPTVTVLGMEVGALLGGNMIVENVFGWPGIGRLVVTAIFDR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCC
DYPLVQGVVMFYAFTFVMANLLVDILYTYLDPKIEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]