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The map label for this gene is DppC5 [H]

Identifier: 20808318

GI number: 20808318

Start: 1849627

End: 1850559

Strand: Reverse

Name: DppC5 [H]

Synonym: TTE1913

Alternate gene names: 20808318

Gene position: 1850559-1849627 (Counterclockwise)

Preceding gene: 20808319

Following gene: 20808317

Centisome position: 68.81

GC content: 38.37

Gene sequence:

>933_bases
ATGACTATAAAAAATGGAATAGTGCCTGCAAAGTATTATGAAGTATCTTATAAAAAATCAAATTTAATAACTAACCTTTT
AAGCCTTTTAGGGAAGATAAAAAAGCATCCAACTGCTTTAATTGGAATGCTTACAATCATAGCCTATATTTTAATGGCTG
TATTCGCACCTTTTATTTCACCTTACAGCGTTAAATACTCAGACCTTTCAGCAAGACTATTGTCCCCTGTGTGGAGTGGA
GGAACGTGGGCACATCCTCTGGGAACTGACCAGGTAGGAAGGGATTTGCTGACACAGATTATATACGGTTCTAGAATATC
AATACTGGTTGGCTTTTTGACTGTTTTGATTTCTGCCTCTATTGGGACTTTCTTAGGAGCAATCGCAGGATACTACAGAG
GAACAGTTGATACGGTGATTTCGCGCTTTGCTGATTTTTTGCTTTCTTTTCCTTTCTTAATATTTGCGGTGGGAGTAATG
GCAGTTTTGGGGCCCGGATTCTGGAATTTGATTTTAGCTCTGACATTTAAAAGCTGGGTGGAATTTTTTAGGCTGGTAAG
AGGTGAAGTTTTGGAGGAGAAAAATAAAGAATATGTAGAAGCTGCTCAGGCTTTGGGAAGAAGCGATGGTGCGATAATTG
TATCAGAAATTCTGCCTAATATATTCCAGTCAATATTTGTCCTTGCCACATTGAGAATGGGATACATGATAATAATGGAA
GCATCTTTGAGCTATTTAGGTTTAGGTGTGCCACCGGATATTCCTACATGGGGTTCTTTAATAAACTCTGGAAGGAACCA
CATATTTGACGCCTACTGGATATCTACTCTTCCAGGCATAGCTTTAGTGATACTTGTACTCAGTATTAACCTTTTTGGAG
AAGGATTGAGAGATATATTAGACCCAAGGCTTAAAGTGGAAGGAAGTGAATAA

Upstream 100 bases:

>100_bases
TCGTAATGTTTTACGCCTTCACTTTTGTCATGGCAAATCTTTTGGTAGATATACTCTACACTTATCTGGACCCCAAGATT
GAACTGTAGGGGGTGTTTGA

Downstream 100 bases:

>100_bases
ATGCTTGAGATTAGGAACTTGAAAGTGGTTTTTGAGACAGACAGGGGAGTAGTAAAAGCGGTAAATGGGATTGACCTAAC
ACTTGAAAGAGGAAAAATTT

Product: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTIKNGIVPAKYYEVSYKKSNLITNLLSLLGKIKKHPTALIGMLTIIAYILMAVFAPFISPYSVKYSDLSARLLSPVWSG
GTWAHPLGTDQVGRDLLTQIIYGSRISILVGFLTVLISASIGTFLGAIAGYYRGTVDTVISRFADFLLSFPFLIFAVGVM
AVLGPGFWNLILALTFKSWVEFFRLVRGEVLEEKNKEYVEAAQALGRSDGAIIVSEILPNIFQSIFVLATLRMGYMIIME
ASLSYLGLGVPPDIPTWGSLINSGRNHIFDAYWISTLPGIALVILVLSINLFGEGLRDILDPRLKVEGSE

Sequences:

>Translated_310_residues
MTIKNGIVPAKYYEVSYKKSNLITNLLSLLGKIKKHPTALIGMLTIIAYILMAVFAPFISPYSVKYSDLSARLLSPVWSG
GTWAHPLGTDQVGRDLLTQIIYGSRISILVGFLTVLISASIGTFLGAIAGYYRGTVDTVISRFADFLLSFPFLIFAVGVM
AVLGPGFWNLILALTFKSWVEFFRLVRGEVLEEKNKEYVEAAQALGRSDGAIIVSEILPNIFQSIFVLATLRMGYMIIME
ASLSYLGLGVPPDIPTWGSLINSGRNHIFDAYWISTLPGIALVILVLSINLFGEGLRDILDPRLKVEGSE
>Mature_309_residues
TIKNGIVPAKYYEVSYKKSNLITNLLSLLGKIKKHPTALIGMLTIIAYILMAVFAPFISPYSVKYSDLSARLLSPVWSGG
TWAHPLGTDQVGRDLLTQIIYGSRISILVGFLTVLISASIGTFLGAIAGYYRGTVDTVISRFADFLLSFPFLIFAVGVMA
VLGPGFWNLILALTFKSWVEFFRLVRGEVLEEKNKEYVEAAQALGRSDGAIIVSEILPNIFQSIFVLATLRMGYMIIMEA
SLSYLGLGVPPDIPTWGSLINSGRNHIFDAYWISTLPGIALVILVLSINLFGEGLRDILDPRLKVEGSE

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=278, Percent_Identity=38.8489208633094, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1787760, Length=279, Percent_Identity=36.2007168458781, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1789964, Length=284, Percent_Identity=39.0845070422535, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787498, Length=269, Percent_Identity=35.3159851301115, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789889, Length=250, Percent_Identity=35.2, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=35.4545454545455, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787549, Length=286, Percent_Identity=29.7202797202797, Blast_Score=124, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34036; Mature: 33904

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKNGIVPAKYYEVSYKKSNLITNLLSLLGKIKKHPTALIGMLTIIAYILMAVFAPFIS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PYSVKYSDLSARLLSPVWSGGTWAHPLGTDQVGRDLLTQIIYGSRISILVGFLTVLISAS
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IGTFLGAIAGYYRGTVDTVISRFADFLLSFPFLIFAVGVMAVLGPGFWNLILALTFKSWV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
EFFRLVRGEVLEEKNKEYVEAAQALGRSDGAIIVSEILPNIFQSIFVLATLRMGYMIIME
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLSYLGLGVPPDIPTWGSLINSGRNHIFDAYWISTLPGIALVILVLSINLFGEGLRDIL
HHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPRLKVEGSE
CCCCCCCCCC
>Mature Secondary Structure 
TIKNGIVPAKYYEVSYKKSNLITNLLSLLGKIKKHPTALIGMLTIIAYILMAVFAPFIS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC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CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]