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The map label for this gene is RssA [H]

Identifier: 20808254

GI number: 20808254

Start: 1787879

End: 1788742

Strand: Reverse

Name: RssA [H]

Synonym: TTE1838

Alternate gene names: 20808254

Gene position: 1788742-1787879 (Counterclockwise)

Preceding gene: 20808255

Following gene: 20808253

Centisome position: 66.51

GC content: 33.68

Gene sequence:

>864_bases
ATGAGACCAAGAGTAGGACTTATACTGGGCGGTGGAGCAGCAAGAGGATATGCGCACTTAGGTATACTAAAAAGATTTGA
AGAAGAAAATATTCCTATTGATTTTATAGTAGGCATAAGTATGGGAGCGATAATAGGAGCAATCTATGCTTCAGGACATA
ATGTAGACAAACTTATAAGTGATGCAAAAAAGATTAATATGTTAAAATTTATAAGTTTATTGGATTTTAAAGCCTCACGA
ACCGGCTTAGTAAAGGGTGAAAAAATAGAGAAATATTTGCGGGGTTATGTGAAAGAAAGTTTTGAGGAACTTAATATTCC
TCTATATATTGTGGCTACTGATATTCAAACAGGAAAGGGAGTAGTATTTAAAGAGGGAGACTTGATAAAAGCTATAAGGG
CAAGCATTTCTATCCCTGCCTTTTTTGAACCTGTGGAGTACAATGGAACCAAGTTAGTTGATGGATCAATTGTTGATTCT
GAGGCAATAGAATTAGCAGCTAGCTTGGGAGCAGACATAATTATAAATTGCGATGTAAGCTCAAGCATTGATATGGGCTT
TTTCGAAAGGTTTTTTTATTCTTTAGCTAATAGTGAGAAAGTGCTGCCAATAAAAAAGTATTTTAATATAAAAAGGCCTT
TACCTGAAATCATATCTATTACAACAACCGCTATTAAATTGTTAAAAGACAATTCTAATAAGAATCTTGAAAAAATGGAG
GGAAATAAACGGGTTTATACAATAAAACCTAATGTCGATAATATACGCTGGTATAGATTTGACCAGGCAGAAAAATGTAT
AAATATGGGATTTGAAGCTGCCGATTCTATTGTTGCGAGAATAAAGAGGGAATTAGAAATGTAG

Upstream 100 bases:

>100_bases
TGGTACGGGAATTCAAGTGATTTTAGATTCTAATGAAAATGAAATTTTGGATGCGTTAAATGCCATACAAATTATCTTTG
AGTAAAAATGGTGATGGGAA

Downstream 100 bases:

>100_bases
GGCAAACGACTTGTGTTTATTTATTCTAAAGGAACTTTTTCCTCAATGTCCAAATAAATTTCAAGCGTAGTATTTACTAC
AATAAATTTGACTTTTAAGA

Product: alpha-beta hydrolase family esterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRPRVGLILGGGAARGYAHLGILKRFEEENIPIDFIVGISMGAIIGAIYASGHNVDKLISDAKKINMLKFISLLDFKASR
TGLVKGEKIEKYLRGYVKESFEELNIPLYIVATDIQTGKGVVFKEGDLIKAIRASISIPAFFEPVEYNGTKLVDGSIVDS
EAIELAASLGADIIINCDVSSSIDMGFFERFFYSLANSEKVLPIKKYFNIKRPLPEIISITTTAIKLLKDNSNKNLEKME
GNKRVYTIKPNVDNIRWYRFDQAEKCINMGFEAADSIVARIKRELEM

Sequences:

>Translated_287_residues
MRPRVGLILGGGAARGYAHLGILKRFEEENIPIDFIVGISMGAIIGAIYASGHNVDKLISDAKKINMLKFISLLDFKASR
TGLVKGEKIEKYLRGYVKESFEELNIPLYIVATDIQTGKGVVFKEGDLIKAIRASISIPAFFEPVEYNGTKLVDGSIVDS
EAIELAASLGADIIINCDVSSSIDMGFFERFFYSLANSEKVLPIKKYFNIKRPLPEIISITTTAIKLLKDNSNKNLEKME
GNKRVYTIKPNVDNIRWYRFDQAEKCINMGFEAADSIVARIKRELEM
>Mature_287_residues
MRPRVGLILGGGAARGYAHLGILKRFEEENIPIDFIVGISMGAIIGAIYASGHNVDKLISDAKKINMLKFISLLDFKASR
TGLVKGEKIEKYLRGYVKESFEELNIPLYIVATDIQTGKGVVFKEGDLIKAIRASISIPAFFEPVEYNGTKLVDGSIVDS
EAIELAASLGADIIINCDVSSSIDMGFFERFFYSLANSEKVLPIKKYFNIKRPLPEIISITTTAIKLLKDNSNKNLEKME
GNKRVYTIKPNVDNIRWYRFDQAEKCINMGFEAADSIVARIKRELEM

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656043, Length=279, Percent_Identity=25.4480286738351, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656041, Length=279, Percent_Identity=25.4480286738351, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656039, Length=279, Percent_Identity=25.4480286738351, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656037, Length=279, Percent_Identity=25.4480286738351, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI116256487, Length=279, Percent_Identity=25.4480286738351, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI148727335, Length=185, Percent_Identity=31.8918918918919, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI148727290, Length=185, Percent_Identity=31.8918918918919, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI226510936, Length=286, Percent_Identity=32.5174825174825, Blast_Score=140, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI71997299, Length=259, Percent_Identity=23.1660231660232, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71997289, Length=259, Percent_Identity=23.1660231660232, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193204778, Length=277, Percent_Identity=21.2996389891697, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=275, Percent_Identity=26.9090909090909, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571388, Length=275, Percent_Identity=29.0909090909091, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI281376913, Length=275, Percent_Identity=30.1818181818182, Blast_Score=92, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 32029; Mature: 32029

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPRVGLILGGGAARGYAHLGILKRFEEENIPIDFIVGISMGAIIGAIYASGHNVDKLIS
CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHH
DAKKINMLKFISLLDFKASRTGLVKGEKIEKYLRGYVKESFEELNIPLYIVATDIQTGKG
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCE
VVFKEGDLIKAIRASISIPAFFEPVEYNGTKLVDGSIVDSEAIELAASLGADIIINCDVS
EEEECCCHHHHHHHHCCCCCEECCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCC
SSIDMGFFERFFYSLANSEKVLPIKKYFNIKRPLPEIISITTTAIKLLKDNSNKNLEKME
CCCCHHHHHHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHC
GNKRVYTIKPNVDNIRWYRFDQAEKCINMGFEAADSIVARIKRELEM
CCCEEEEECCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPRVGLILGGGAARGYAHLGILKRFEEENIPIDFIVGISMGAIIGAIYASGHNVDKLIS
CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHH
DAKKINMLKFISLLDFKASRTGLVKGEKIEKYLRGYVKESFEELNIPLYIVATDIQTGKG
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCE
VVFKEGDLIKAIRASISIPAFFEPVEYNGTKLVDGSIVDSEAIELAASLGADIIINCDVS
EEEECCCHHHHHHHHCCCCCEECCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCC
SSIDMGFFERFFYSLANSEKVLPIKKYFNIKRPLPEIISITTTAIKLLKDNSNKNLEKME
CCCCHHHHHHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHC
GNKRVYTIKPNVDNIRWYRFDQAEKCINMGFEAADSIVARIKRELEM
CCCEEEEECCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]