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The map label for this gene is ydcP [H]

Identifier: 20808112

GI number: 20808112

Start: 1635763

End: 1638117

Strand: Reverse

Name: ydcP [H]

Synonym: TTE1686

Alternate gene names: 20808112

Gene position: 1638117-1635763 (Counterclockwise)

Preceding gene: 20808113

Following gene: 20808111

Centisome position: 60.91

GC content: 37.03

Gene sequence:

>2355_bases
ATGAAAAGGGTTGAACTATTGGCACCGGCAGGGGATTATAATGCGCTTTTAAATGCTGTAAATGCAGGCTGTGATGCCGT
TTATTTGGGAGGCAAGAATTTTGGGGCAAGAGCTTATGCCCCTAATTTTGATTATGAGGACCTTGAGAAAGCTTTAGAGT
TTTGTCATTTGAGGGATGTTAAGGTTTATGTGACTGTCAACACTTTGATATTAAACGAAGAAATGGATAAACTTGTAGAG
TACATTGACTTTTTATACTCAATTGGGGTAGACGCTGTTATAGTGCAAGATTTAGGAGTGCTGAAATTTTTAAGAGAAAA
TTATCCGGATTTTGAAGTGCACGCCAGTACGCAGATGACAGTACATAACCTGGAAGGCGTGCGGGAATTAGCTGAAAAAG
GTGTGTCCAGGGTTATTTTATCAAGGGAATTGACTCTTAAAGAAATAAAAGATATTGCTTCCAATTCCCCTATAGATGTA
GAGGTTTTTGTTCACGGGGCTATGTGCGTGAGCTATTCAGGTCAGTGCTTTATGAGCAGCCTCATAGGAGGAAGAAGCGG
CAACAGAGGGAGATGTGCTCAACCCTGCCGTTTGAAGTATTCTTTAGTCAACAAGGAAGGGAATATTTTAAAAGAAAATT
TGCACCTTCTGAGTATGGCGGATTTGTGCACAATTGAACATATACCTCTCCTTATTGAAGCAGGCGTTTCTTCTTTTAAG
ATTGAGGGAAGGATGAAAAGTCCGGAATACGTCGCTTCTGTTGTGAAAGCTTACAGAGATGCCATAGACAGTTATTACGA
AGAGAGAGCTTTTGATAGTACTAAAGCCATGGAAGAAATGGCTAAAGTCTTCAATAGAGGTTTTTCTACGGGGTATTTGT
TTGAGAGAAAGCCTTCCAAGATGAGCTATGTTACTCCTAAGAATATAGGGGTACCTGTTGCGGAGGTAGTAAAAACCAAA
GGGAGAGAAGTAAAAGTAAGGCTTCTTCAAGACATAAGAAAGGGAGATGGGATTTCTGATTCAAAGGGAGAAAAAGGGCA
CAGGATACAGGAAATCATAAAAAATGGGCAGAAAGTAGATGTGGCTTTTAAAGGGGAGATAGTGACCCTTTATTTGGATT
TTTACCCCAAAGAAAAAGATATTTTGAATAAAACTTACGATTACCTTTTAAATGAAAGTTTAAAAAATTTGCCAGAGAAA
AAGGTTCCTGTGAAAATTTATGCAGAATTGAAAAAAGAGATGCCTTTTGTAGTTAGAGTAGAAGATGGAATTTTCTTTGG
GGAAGCGAACAGTGGAAGTATTCCGCAGGTAGCTAAAAAGGTTTCTATAGAAGAGGATTTTCTAAAGGACAAGTTGTCTC
AGATTGGCGATACGCCTTTTTATCCTGAGAAAGTAGTTGTAAGTTTAGATAAAGGGCTTTTCATGCCTGTAAAGGACATT
AAGGAGACAAGAAGGAAGGCAATATATGAATTAAAGTTAAAAAAATTGGCTTTCTATCAAAGGGAAAAGCTACAGAAAAA
AGTTAAGCTTCCAAAGGGAAGAGAAAAGAGTGAAAGTCCAGTTTTGACCTTCTACACTGATAAATTAAATCATCTAGAAA
TCGCAGCATCTCTGGGGATACAGTATGTTTATTTTGATTACAAACTCAATGAAAGTATCTTAAAACAAGCAGTTAAATTG
CTGGAGGGAAAAGATACTGTACTTGTTGCTGCTTTTCCTTCAATTTTAAGAGAAGAGATGAAAGATATTGAAAGGCAATT
GCGGCTTTTAAGAGAATTGGATATACGGAATATCCTTGTTTCCAATTTGGGGCTTTATCATATTTTAAAAAATAGTGACT
TTAGACTGTTTATTGATTATCCTCTCAATGTTTTCAACAGCCTTGCTGTAGAGTATTTTAATGCTTACGCTGTGACCCTT
TCTTATGAACTTACGCTTGAGCAGATGAAAGACATTGCAAAAAGAAGCGATATAAAGTTTGAGGCAGTGATATATGGTCA
CCTTCCTCTTATGACTACGGAATACTGCCCTATAAGAAATTTAGTGGGTTGCGACAGGGCAAAATGCGAAAAGGGTTACT
ATTTTCTTAAAGACAGGAAAGGTAAATTGATGCCTATAAAGAGCAATGGTTTTTGCAGGATTCAGATTTTAAATGGGGAT
GTGCTCTTTATGGCAAATCACATGGAAGAGCTGAAAAAATCCGGCCTTTCTTTTCTCAGAATAAATGATACAATAGAAGA
AGATGAGGAAATAGAAAAAATTTTACAAATGCATATAAAAGCATTAGAAGGAGAAAAAATTGAGGTTCCAGAGGGAAACT
ATACCAAAGGACATTTTTACAGAGGAGTTTTGTAG

Upstream 100 bases:

>100_bases
GAACAAGAGCTAGAAAATACTGTAAATAAACTTTTGGAGACAGAAGAAGAGTTCAGGCAGTTTTTAGAAACATTTGACCA
AGAAAAGTAAAGGTGGTTGG

Downstream 100 bases:

>100_bases
TCATGAAGGGAATGAGGGAAAAAACTTTAAAAAGCCTTGAGTTTGACAAAATAGTTAAGCTAATTGCGAATGAATGCGAC
TCAGAGCTTGGGAGAGAAAA

Product: collagenase-like protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 784; Mature: 784

Protein sequence:

>784_residues
MKRVELLAPAGDYNALLNAVNAGCDAVYLGGKNFGARAYAPNFDYEDLEKALEFCHLRDVKVYVTVNTLILNEEMDKLVE
YIDFLYSIGVDAVIVQDLGVLKFLRENYPDFEVHASTQMTVHNLEGVRELAEKGVSRVILSRELTLKEIKDIASNSPIDV
EVFVHGAMCVSYSGQCFMSSLIGGRSGNRGRCAQPCRLKYSLVNKEGNILKENLHLLSMADLCTIEHIPLLIEAGVSSFK
IEGRMKSPEYVASVVKAYRDAIDSYYEERAFDSTKAMEEMAKVFNRGFSTGYLFERKPSKMSYVTPKNIGVPVAEVVKTK
GREVKVRLLQDIRKGDGISDSKGEKGHRIQEIIKNGQKVDVAFKGEIVTLYLDFYPKEKDILNKTYDYLLNESLKNLPEK
KVPVKIYAELKKEMPFVVRVEDGIFFGEANSGSIPQVAKKVSIEEDFLKDKLSQIGDTPFYPEKVVVSLDKGLFMPVKDI
KETRRKAIYELKLKKLAFYQREKLQKKVKLPKGREKSESPVLTFYTDKLNHLEIAASLGIQYVYFDYKLNESILKQAVKL
LEGKDTVLVAAFPSILREEMKDIERQLRLLRELDIRNILVSNLGLYHILKNSDFRLFIDYPLNVFNSLAVEYFNAYAVTL
SYELTLEQMKDIAKRSDIKFEAVIYGHLPLMTTEYCPIRNLVGCDRAKCEKGYYFLKDRKGKLMPIKSNGFCRIQILNGD
VLFMANHMEELKKSGLSFLRINDTIEEDEEIEKILQMHIKALEGEKIEVPEGNYTKGHFYRGVL

Sequences:

>Translated_784_residues
MKRVELLAPAGDYNALLNAVNAGCDAVYLGGKNFGARAYAPNFDYEDLEKALEFCHLRDVKVYVTVNTLILNEEMDKLVE
YIDFLYSIGVDAVIVQDLGVLKFLRENYPDFEVHASTQMTVHNLEGVRELAEKGVSRVILSRELTLKEIKDIASNSPIDV
EVFVHGAMCVSYSGQCFMSSLIGGRSGNRGRCAQPCRLKYSLVNKEGNILKENLHLLSMADLCTIEHIPLLIEAGVSSFK
IEGRMKSPEYVASVVKAYRDAIDSYYEERAFDSTKAMEEMAKVFNRGFSTGYLFERKPSKMSYVTPKNIGVPVAEVVKTK
GREVKVRLLQDIRKGDGISDSKGEKGHRIQEIIKNGQKVDVAFKGEIVTLYLDFYPKEKDILNKTYDYLLNESLKNLPEK
KVPVKIYAELKKEMPFVVRVEDGIFFGEANSGSIPQVAKKVSIEEDFLKDKLSQIGDTPFYPEKVVVSLDKGLFMPVKDI
KETRRKAIYELKLKKLAFYQREKLQKKVKLPKGREKSESPVLTFYTDKLNHLEIAASLGIQYVYFDYKLNESILKQAVKL
LEGKDTVLVAAFPSILREEMKDIERQLRLLRELDIRNILVSNLGLYHILKNSDFRLFIDYPLNVFNSLAVEYFNAYAVTL
SYELTLEQMKDIAKRSDIKFEAVIYGHLPLMTTEYCPIRNLVGCDRAKCEKGYYFLKDRKGKLMPIKSNGFCRIQILNGD
VLFMANHMEELKKSGLSFLRINDTIEEDEEIEKILQMHIKALEGEKIEVPEGNYTKGHFYRGVL
>Mature_784_residues
MKRVELLAPAGDYNALLNAVNAGCDAVYLGGKNFGARAYAPNFDYEDLEKALEFCHLRDVKVYVTVNTLILNEEMDKLVE
YIDFLYSIGVDAVIVQDLGVLKFLRENYPDFEVHASTQMTVHNLEGVRELAEKGVSRVILSRELTLKEIKDIASNSPIDV
EVFVHGAMCVSYSGQCFMSSLIGGRSGNRGRCAQPCRLKYSLVNKEGNILKENLHLLSMADLCTIEHIPLLIEAGVSSFK
IEGRMKSPEYVASVVKAYRDAIDSYYEERAFDSTKAMEEMAKVFNRGFSTGYLFERKPSKMSYVTPKNIGVPVAEVVKTK
GREVKVRLLQDIRKGDGISDSKGEKGHRIQEIIKNGQKVDVAFKGEIVTLYLDFYPKEKDILNKTYDYLLNESLKNLPEK
KVPVKIYAELKKEMPFVVRVEDGIFFGEANSGSIPQVAKKVSIEEDFLKDKLSQIGDTPFYPEKVVVSLDKGLFMPVKDI
KETRRKAIYELKLKKLAFYQREKLQKKVKLPKGREKSESPVLTFYTDKLNHLEIAASLGIQYVYFDYKLNESILKQAVKL
LEGKDTVLVAAFPSILREEMKDIERQLRLLRELDIRNILVSNLGLYHILKNSDFRLFIDYPLNVFNSLAVEYFNAYAVTL
SYELTLEQMKDIAKRSDIKFEAVIYGHLPLMTTEYCPIRNLVGCDRAKCEKGYYFLKDRKGKLMPIKSNGFCRIQILNGD
VLFMANHMEELKKSGLSFLRINDTIEEDEEIEKILQMHIKALEGEKIEVPEGNYTKGHFYRGVL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=512, Percent_Identity=34.375, Blast_Score=288, Evalue=1e-78,
Organism=Escherichia coli, GI1788397, Length=340, Percent_Identity=31.1764705882353, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI1789548, Length=293, Percent_Identity=33.4470989761092, Blast_Score=153, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 89471; Mature: 89471

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVELLAPAGDYNALLNAVNAGCDAVYLGGKNFGARAYAPNFDYEDLEKALEFCHLRDV
CCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
KVYVTVNTLILNEEMDKLVEYIDFLYSIGVDAVIVQDLGVLKFLRENYPDFEVHASTQMT
EEEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCEEEECCCEEE
VHNLEGVRELAEKGVSRVILSRELTLKEIKDIASNSPIDVEVFVHGAMCVSYSGQCFMSS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCCHHHHHH
LIGGRSGNRGRCAQPCRLKYSLVNKEGNILKENLHLLSMADLCTIEHIPLLIEAGVSSFK
HHCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCHHEECCCCEEE
IEGRMKSPEYVASVVKAYRDAIDSYYEERAFDSTKAMEEMAKVFNRGFSTGYLFERKPSK
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC
MSYVTPKNIGVPVAEVVKTKGREVKVRLLQDIRKGDGISDSKGEKGHRIQEIIKNGQKVD
CEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEE
VAFKGEIVTLYLDFYPKEKDILNKTYDYLLNESLKNLPEKKVPVKIYAELKKEMPFVVRV
EEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEE
EDGIFFGEANSGSIPQVAKKVSIEEDFLKDKLSQIGDTPFYPEKVVVSLDKGLFMPVKDI
ECCEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHH
KETRRKAIYELKLKKLAFYQREKLQKKVKLPKGREKSESPVLTFYTDKLNHLEIAASLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCE
QYVYFDYKLNESILKQAVKLLEGKDTVLVAAFPSILREEMKDIERQLRLLRELDIRNILV
EEEEEEEECCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNLGLYHILKNSDFRLFIDYPLNVFNSLAVEYFNAYAVTLSYELTLEQMKDIAKRSDIKF
HCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHCEEEEEEEEEEEHHHHHHHHHHCCCEE
EAVIYGHLPLMTTEYCPIRNLVGCDRAKCEKGYYFLKDRKGKLMPIKSNGFCRIQILNGD
EEEEEECCCCCCCCCCCCHHHCCCCHHHHCCCEEEEECCCCCEEEECCCCEEEEEEECCC
VLFMANHMEELKKSGLSFLRINDTIEEDEEIEKILQMHIKALEGEKIEVPEGNYTKGHFY
EEEEHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEE
RGVL
ECCC
>Mature Secondary Structure
MKRVELLAPAGDYNALLNAVNAGCDAVYLGGKNFGARAYAPNFDYEDLEKALEFCHLRDV
CCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
KVYVTVNTLILNEEMDKLVEYIDFLYSIGVDAVIVQDLGVLKFLRENYPDFEVHASTQMT
EEEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCEEEECCCEEE
VHNLEGVRELAEKGVSRVILSRELTLKEIKDIASNSPIDVEVFVHGAMCVSYSGQCFMSS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCCHHHHHH
LIGGRSGNRGRCAQPCRLKYSLVNKEGNILKENLHLLSMADLCTIEHIPLLIEAGVSSFK
HHCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCHHEECCCCEEE
IEGRMKSPEYVASVVKAYRDAIDSYYEERAFDSTKAMEEMAKVFNRGFSTGYLFERKPSK
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC
MSYVTPKNIGVPVAEVVKTKGREVKVRLLQDIRKGDGISDSKGEKGHRIQEIIKNGQKVD
CEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEE
VAFKGEIVTLYLDFYPKEKDILNKTYDYLLNESLKNLPEKKVPVKIYAELKKEMPFVVRV
EEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEE
EDGIFFGEANSGSIPQVAKKVSIEEDFLKDKLSQIGDTPFYPEKVVVSLDKGLFMPVKDI
ECCEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHH
KETRRKAIYELKLKKLAFYQREKLQKKVKLPKGREKSESPVLTFYTDKLNHLEIAASLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCE
QYVYFDYKLNESILKQAVKLLEGKDTVLVAAFPSILREEMKDIERQLRLLRELDIRNILV
EEEEEEEECCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNLGLYHILKNSDFRLFIDYPLNVFNSLAVEYFNAYAVTLSYELTLEQMKDIAKRSDIKF
HCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHCEEEEEEEEEEEHHHHHHHHHHCCCEE
EAVIYGHLPLMTTEYCPIRNLVGCDRAKCEKGYYFLKDRKGKLMPIKSNGFCRIQILNGD
EEEEEECCCCCCCCCCCCHHHCCCCHHHHCCCEEEEECCCCCEEEECCCCEEEEEEECCC
VLFMANHMEELKKSGLSFLRINDTIEEDEEIEKILQMHIKALEGEKIEVPEGNYTKGHFY
EEEEHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEE
RGVL
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]