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The map label for this gene is ybgL [C]

Identifier: 20808037

GI number: 20808037

Start: 1563064

End: 1563831

Strand: Reverse

Name: ybgL [C]

Synonym: TTE1608

Alternate gene names: 20808037

Gene position: 1563831-1563064 (Counterclockwise)

Preceding gene: 20808043

Following gene: 20808036

Centisome position: 58.15

GC content: 38.8

Gene sequence:

>768_bases
ATGTACAGAGTGGATATAAATAGCGATATTGGAGAGAGTTTTGGAGCTTATAAAATAGGAATGGATGAAGAGGTAGTCAA
ATATATTTCTTCTGCCAATATTGCATGTGGCTTTCATGCAGGAGATCCAATGGTAATGGCTTTGACTGTTGACCGTTGCT
TAAAAAATGTGGTTTCAATAGGGGCACATCCTGGTTTTCCTGATTTGCTAGGGTTTGGAAGGAGAAATTTGGACGCTTCT
TCAGAAGAAATAAAAAATTACGTTATATATCAAATAGGAGCATTACAGGCTTTTGCTGCAATCAGAGGTACAAAATTACA
GCATGTAAAGGCTCATGGAGCTCTTTATAACATGGCAGCAGTGGATGAAAAAATTGCCATGGCAATTGCAGAAGCTATAG
CTTCTGTAGACAGAAATTTAATATGTGTTGGAATGGCAAATACAGCGATGGAAAGAGCAGCAGAGAAGGTTGGATTGAGA
TTTGCATATGAGGTCTTTGCAGATAGAAATATAAATCCAGATGGCACTCTAGTTTCTAGAAAACATCCCAATGCCATAAT
CCACGATGAAGAATTGGCTTGCAAGAGAGTCTTGAGGATGGTAAAGGAAGGGGTTTGTGAGGCAATAGATGGGACTTTGG
TAAAAGTAAAGGTTGACACTATATGTGTACACGGTGATAATCCGCAGGCTGTGGAGTTTGCAAAAAAGATAAGGGAAACT
TTAGAAGAAAACGGAGTAGACATACTTCCAATGGGCGAATTTGTATAA

Upstream 100 bases:

>100_bases
GCCTATCAATTTAGTAGAATTAAAACAGTAAAAGAGCAGAAGAGATGGCACAAAAATTGCAAAGGGTACAATGTAGAATA
AAGATGAGGGGGTAATGATT

Downstream 100 bases:

>100_bases
AGTGAGGAGTTGATATAGATGTACGAAAAACCCCGAATATTGCCTTTTGGCGACAAAGGAATTGTAGTTGAGTTTGGAAA
TGAAATAACCGTCGAATGCA

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MYRVDINSDIGESFGAYKIGMDEEVVKYISSANIACGFHAGDPMVMALTVDRCLKNVVSIGAHPGFPDLLGFGRRNLDAS
SEEIKNYVIYQIGALQAFAAIRGTKLQHVKAHGALYNMAAVDEKIAMAIAEAIASVDRNLICVGMANTAMERAAEKVGLR
FAYEVFADRNINPDGTLVSRKHPNAIIHDEELACKRVLRMVKEGVCEAIDGTLVKVKVDTICVHGDNPQAVEFAKKIRET
LEENGVDILPMGEFV

Sequences:

>Translated_255_residues
MYRVDINSDIGESFGAYKIGMDEEVVKYISSANIACGFHAGDPMVMALTVDRCLKNVVSIGAHPGFPDLLGFGRRNLDAS
SEEIKNYVIYQIGALQAFAAIRGTKLQHVKAHGALYNMAAVDEKIAMAIAEAIASVDRNLICVGMANTAMERAAEKVGLR
FAYEVFADRNINPDGTLVSRKHPNAIIHDEELACKRVLRMVKEGVCEAIDGTLVKVKVDTICVHGDNPQAVEFAKKIRET
LEENGVDILPMGEFV
>Mature_255_residues
MYRVDINSDIGESFGAYKIGMDEEVVKYISSANIACGFHAGDPMVMALTVDRCLKNVVSIGAHPGFPDLLGFGRRNLDAS
SEEIKNYVIYQIGALQAFAAIRGTKLQHVKAHGALYNMAAVDEKIAMAIAEAIASVDRNLICVGMANTAMERAAEKVGLR
FAYEVFADRNINPDGTLVSRKHPNAIIHDEELACKRVLRMVKEGVCEAIDGTLVKVKVDTICVHGDNPQAVEFAKKIRET
LEENGVDILPMGEFV

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=244, Percent_Identity=42.6229508196721, Blast_Score=207, Evalue=7e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1608_THETN (Q8R9J9)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_623208.1
- ProteinModelPortal:   Q8R9J9
- SMR:   Q8R9J9
- GeneID:   996105
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1608
- NMPDR:   fig|273068.3.peg.1585
- HOGENOM:   HBG482818
- OMA:   IDTVCVH
- ProtClustDB:   PRK05406
- BioCyc:   TTEN273068:TTE1608-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 27800; Mature: 27800

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRVDINSDIGESFGAYKIGMDEEVVKYISSANIACGFHAGDPMVMALTVDRCLKNVVSI
CEEEECCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHHHH
GAHPGFPDLLGFGRRNLDASSEEIKNYVIYQIGALQAFAAIRGTKLQHVKAHGALYNMAA
CCCCCCHHHHHCCCCCCCCCHHHHHHHHEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VDEKIAMAIAEAIASVDRNLICVGMANTAMERAAEKVGLRFAYEVFADRNINPDGTLVSR
HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
KHPNAIIHDEELACKRVLRMVKEGVCEAIDGTLVKVKVDTICVHGDNPQAVEFAKKIRET
CCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHH
LEENGVDILPMGEFV
HHHCCCEEEECCCCC
>Mature Secondary Structure
MYRVDINSDIGESFGAYKIGMDEEVVKYISSANIACGFHAGDPMVMALTVDRCLKNVVSI
CEEEECCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHHHH
GAHPGFPDLLGFGRRNLDASSEEIKNYVIYQIGALQAFAAIRGTKLQHVKAHGALYNMAA
CCCCCCHHHHHCCCCCCCCCHHHHHHHHEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VDEKIAMAIAEAIASVDRNLICVGMANTAMERAAEKVGLRFAYEVFADRNINPDGTLVSR
HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
KHPNAIIHDEELACKRVLRMVKEGVCEAIDGTLVKVKVDTICVHGDNPQAVEFAKKIRET
CCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHH
LEENGVDILPMGEFV
HHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336