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The map label for this gene is RpoE3 [H]

Identifier: 20807987

GI number: 20807987

Start: 1517211

End: 1517675

Strand: Direct

Name: RpoE3 [H]

Synonym: TTE1557

Alternate gene names: 20807987

Gene position: 1517211-1517675 (Clockwise)

Preceding gene: 20807984

Following gene: 20807988

Centisome position: 56.41

GC content: 33.12

Gene sequence:

>465_bases
ATGTGGCAGGATTTGTACAAAGCTGCATTCTATTATTTACTTAAATTGGGTGTACCACAGGCTGACGCTGAAGACATAGC
CCAAGAAGCTCTGCTTTCCACATACTTGAATTTAGACGGCATTCAAGAGGGAAAATTAAAAGCTTATGTTTTGACTGCGG
CGCGAAACAAATACACTGATTATCTGCGCAAAACCAAAAAAGATGTGGCAGTTTCTATTATAAATGTCTTTCCTCAAAGT
ACCTTTTCAGAGTTTCAACAGATTGAAAATAAAGAAGTAATAAAAAAAGCAGTTAATAGGCTTACTCTCAATGAGCAAAA
GCTCTTTTACCTTAAATTCATATTAGAAATGTCAAATGAAGAAATTTCCTCTTACTTAAAAACCAATTCCAATACAGTAA
AGACAATGGTATGGAGACTAAGAAAAAAATTAAAAGAATATTTAAAAGAGGAGGAGAAAAGTTAA

Upstream 100 bases:

>100_bases
ATAATCGAAATAACAACGAATTTTTGCATATTGTTAATTTGTTTACTTTTTCATCCCTCAAACGTCTTTATTAATGAAAA
GCTATAAGGAGGAGGAGTTA

Downstream 100 bases:

>100_bases
ATGGGATCAGGTTTAAATAAGCCAATAGGCGATATACCTTTTGACGAAAAAGCTTTTTTGCGCAAAGCTCGTTTTAAAAG
CATACTTCGCATAATAATAA

Product: DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTDYLRKTKKDVAVSIINVFPQS
TFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNEEISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS

Sequences:

>Translated_154_residues
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTDYLRKTKKDVAVSIINVFPQS
TFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNEEISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS
>Mature_154_residues
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTDYLRKTKKDVAVSIINVFPQS
TFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNEEISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18095; Mature: 18095

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTD
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
YLRKTKKDVAVSIINVFPQSTFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTD
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
YLRKTKKDVAVSIINVFPQSTFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]