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The map label for this gene is rbfA

Identifier: 20807839

GI number: 20807839

Start: 1375066

End: 1375434

Strand: Reverse

Name: rbfA

Synonym: TTE1392

Alternate gene names: 20807839

Gene position: 1375434-1375066 (Counterclockwise)

Preceding gene: 20807840

Following gene: 20807838

Centisome position: 51.14

GC content: 35.23

Gene sequence:

>369_bases
ATGAGAAAAATGCAGTACAGAAGCCATAGGTTATCCGAGGAATTGAAAAAAGAGATAAGCAAAATGATATTGGAAGAAAT
AAAAGACCCGAGAATTAAAGCTATGGTCAGCATAACGGATATAGAAGTGACTAAAGATTTACGATATGCAAAAGTGTATG
TAAGCATATATGGCAGTGAAGAAGAAAAGAGAGAAACTTTTGAAGGATTAAAAAGCGCAGCTGGATACATCAGGCACGAA
ATAGGCCGCAGAATAAAGATGAGATATACCCCGGAAATAATATTTGAACTGGATCACTCTATAGAATACGGCGCAAAAAT
TTCAGAAATTTTAAAAGAACTGAACAAACAAGAGGGTGATGACAATTGA

Upstream 100 bases:

>100_bases
ATTTGAATGCGGAATAGGCATTGAGAAGTTCAATGACATAAAAGAGGGAGATATCATAGAAGCATACACAATGGAAGAAA
TCCCTCGTTAAGAAGAAAGG

Downstream 100 bases:

>100_bases
TACTGATAGACGTAGTTAACGAAATAAAAAAGGCAGAAAGCGTAATTCTCCTTACACATGTAGCACCTGATGGAGATGCT
ATAGGGTCTGTCACTGGAAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MRKMQYRSHRLSEELKKEISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSEEEKRETFEGLKSAAGYIRHE
IGRRIKMRYTPEIIFELDHSIEYGAKISEILKELNKQEGDDN

Sequences:

>Translated_122_residues
MRKMQYRSHRLSEELKKEISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSEEEKRETFEGLKSAAGYIRHE
IGRRIKMRYTPEIIFELDHSIEYGAKISEILKELNKQEGDDN
>Mature_122_residues
MRKMQYRSHRLSEELKKEISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSEEEKRETFEGLKSAAGYIRHE
IGRRIKMRYTPEIIFELDHSIEYGAKISEILKELNKQEGDDN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=114, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_THETN (Q8RA38)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_623010.1
- ProteinModelPortal:   Q8RA38
- SMR:   Q8RA38
- GeneID:   997862
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1392
- NMPDR:   fig|273068.3.peg.1357
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   TTEN273068:TTE1392-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14457; Mature: 14457

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKMQYRSHRLSEELKKEISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSE
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEHHHHHHHHHHHHHHHEEEEECCC
EEKRETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDHSIEYGAKISEILKELNKQEGD
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
DN
CC
>Mature Secondary Structure
MRKMQYRSHRLSEELKKEISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSE
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEHHHHHHHHHHHHHHHEEEEECCC
EEKRETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDHSIEYGAKISEILKELNKQEGD
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
DN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336