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The map label for this gene is yqgF [C]

Identifier: 20807699

GI number: 20807699

Start: 1251270

End: 1251689

Strand: Direct

Name: yqgF [C]

Synonym: TTE1250

Alternate gene names: 20807699

Gene position: 1251270-1251689 (Clockwise)

Preceding gene: 20807698

Following gene: 20807700

Centisome position: 46.53

GC content: 38.57

Gene sequence:

>420_bases
TTGAGAGTATTGGGATTGGACGTAGGAGACAAGACCATTGGAGTGGCAATAAGCGATGTTTCTTCAACAATTGCCCAGGG
GATTACAACTATAAGAAGAAAAAGTTTTGTAGAAGATGTGAAAGCAATAGAGGAAATTGTGAAAAAATATAGCGTAGAAA
AAGTTGTGGTGGGTCTTCCAAAAAACATGAACGGTTCAATAGGACCTCAGGGGGAAAAAGTCATTAAGTTTGGAGAAAAA
TTAAGAGAGGTGTTAAGAATTCCTGTTGTATTTTGGGATGAAAGGCTTACTACCCTTCAGGCGGAAAGGTTTTTGATAGA
AGGAGTGGACATGTCAAGGGGAAAGCGGAAAAAGGTGATTGACAAACTTGCTGCTACTATAATACTCCAGAGCTATCTTG
ACTCTCAAAAAAATTCCTAA

Upstream 100 bases:

>100_bases
AGAAAGAGATGAGCTGGTGGAAGAACTTCTAAAAAGTTACTTGAGCAAAGAATAAATGCCTCACCTCGCGTGAGGCATTT
TTTTAAGGACGGGGTGTAAC

Downstream 100 bases:

>100_bases
AAAGCCTTGACAGCTGGCTGGAGATGTTATACAATTACATTATCTTGGTAGAATTGAGGTGAAAGTTTATGGAACCAGAA
ATTATTCAGTTGATTGACGA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPKNMNGSIGPQGEKVIKFGEK
LREVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVIDKLAATIILQSYLDSQKNS

Sequences:

>Translated_139_residues
MRVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPKNMNGSIGPQGEKVIKFGEK
LREVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVIDKLAATIILQSYLDSQKNS
>Mature_139_residues
MRVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPKNMNGSIGPQGEKVIKFGEK
LREVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVIDKLAATIILQSYLDSQKNS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=31.8181818181818, Blast_Score=73, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_THETN (Q8R5S9)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_622870.1
- ProteinModelPortal:   Q8R5S9
- SMR:   Q8R5S9
- GeneID:   997452
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1250
- NMPDR:   fig|273068.3.peg.1037
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   TTEN273068:TTE1250-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15474; Mature: 15474

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLP
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
KNMNGSIGPQGEKVIKFGEKLREVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVI
CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
DKLAATIILQSYLDSQKNS
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLP
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
KNMNGSIGPQGEKVIKFGEKLREVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVI
CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
DKLAATIILQSYLDSQKNS
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336