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The map label for this gene is RpiR2 [C]

Identifier: 20807667

GI number: 20807667

Start: 1212393

End: 1213184

Strand: Direct

Name: RpiR2 [C]

Synonym: TTE1212

Alternate gene names: 20807667

Gene position: 1212393-1213184 (Clockwise)

Preceding gene: 20807666

Following gene: 20807668

Centisome position: 45.08

GC content: 36.49

Gene sequence:

>792_bases
ATGATTGCGCAATACATTGTGAACAATTATGAAAAAGCAGTGTTTATGACTTCCAAAGATATTGCAAAAGAACTTAAAAT
AAGTGAATCTACTGTTGTGAGATTTGCAAGTGAATTAGGGTATAATGGTTTTCCAGAACTGAAGACTGCTCTGCAGGAGT
TTGTGAAGGGCAAGTTGACCACATTGCAAAGGCTAGAAATAACAAAGGAAAGTAATGAAGAAAAACTACTTGCAGAAGTC
CTAAACTTGGACATAGGAAGCATAAAACAGACACTCAACGAAGTAGATGTGGGAACTTTCAAAAAAGTAGTAGATTGTAT
TTTGAATGCTCGAAAAATTTATATTGTTGGGCTGAGAACTTCTACGGTGATAGCTGAATACATGGGGTTTTATTTGAACT
TGCTTCGTGATAACGTAATAGTAGTAAAGAGAGGAGTATCAGATCTTTTTGAACAGATTTTAAGGGTAGAGAGAGAAGAT
TTAGTGATAGGAATAGGATTTCCTCGGTATTCCAGAAGGACTGTGGATTTGCTTAAATATGCAAAATCACAGGGGGCTAC
AGTTATCGCATTAACCGACAGTTTTATTTCCCCTCTTGCGAGGATAGCAGATGAGGTGCTTACAGCCAAGAATAGTATAA
TCTCCTTTGTGGATTCTCTTGTGGCTCCATTAAGTCTTGTAAATGCGATTGTAGTAGCAGTGGGAACTAGAGAAAGAGAA
ACAATAACAGGTGTTTTTGAAAAGCTAGAGAATATTTGGGAGGAATATGAGGTATATCTGACTAAATTTTAA

Upstream 100 bases:

>100_bases
GAGGGTTTTAAACTGGGGGGAGTTCCATGGGATAAATAAAAAGGAGGACCTTATAGAAAGAATACAGAACTGCTATGCTC
ACCTTAGTAAAAGTCAAAAA

Downstream 100 bases:

>100_bases
TTTTTCTGGGGATAAGAGTGGAGGTAAGGAATGACCGAGAGGGGATGCCTATGGAAAGATACTGGGCTATGACAGCAGAA
AAAGTGGTTGAAAAGTTAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIAQYIVNNYEKAVFMTSKDIAKELKISESTVVRFASELGYNGFPELKTALQEFVKGKLTTLQRLEITKESNEEKLLAEV
LNLDIGSIKQTLNEVDVGTFKKVVDCILNARKIYIVGLRTSTVIAEYMGFYLNLLRDNVIVVKRGVSDLFEQILRVERED
LVIGIGFPRYSRRTVDLLKYAKSQGATVIALTDSFISPLARIADEVLTAKNSIISFVDSLVAPLSLVNAIVVAVGTRERE
TITGVFEKLENIWEEYEVYLTKF

Sequences:

>Translated_263_residues
MIAQYIVNNYEKAVFMTSKDIAKELKISESTVVRFASELGYNGFPELKTALQEFVKGKLTTLQRLEITKESNEEKLLAEV
LNLDIGSIKQTLNEVDVGTFKKVVDCILNARKIYIVGLRTSTVIAEYMGFYLNLLRDNVIVVKRGVSDLFEQILRVERED
LVIGIGFPRYSRRTVDLLKYAKSQGATVIALTDSFISPLARIADEVLTAKNSIISFVDSLVAPLSLVNAIVVAVGTRERE
TITGVFEKLENIWEEYEVYLTKF
>Mature_263_residues
MIAQYIVNNYEKAVFMTSKDIAKELKISESTVVRFASELGYNGFPELKTALQEFVKGKLTTLQRLEITKESNEEKLLAEV
LNLDIGSIKQTLNEVDVGTFKKVVDCILNARKIYIVGLRTSTVIAEYMGFYLNLLRDNVIVVKRGVSDLFEQILRVERED
LVIGIGFPRYSRRTVDLLKYAKSQGATVIALTDSFISPLARIADEVLTAKNSIISFVDSLVAPLSLVNAIVVAVGTRERE
TITGVFEKLENIWEEYEVYLTKF

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=218, Percent_Identity=30.2752293577982, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788159, Length=207, Percent_Identity=24.1545893719807, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 29648; Mature: 29648

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAQYIVNNYEKAVFMTSKDIAKELKISESTVVRFASELGYNGFPELKTALQEFVKGKLT
CCHHHHHHCHHHHEEEEHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
TLQRLEITKESNEEKLLAEVLNLDIGSIKQTLNEVDVGTFKKVVDCILNARKIYIVGLRT
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECH
STVIAEYMGFYLNLLRDNVIVVKRGVSDLFEQILRVEREDLVIGIGFPRYSRRTVDLLKY
HHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCHHCEEEEECCCCCCHHHHHHHHH
AKSQGATVIALTDSFISPLARIADEVLTAKNSIISFVDSLVAPLSLVNAIVVAVGTRERE
HHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TITGVFEKLENIWEEYEVYLTKF
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIAQYIVNNYEKAVFMTSKDIAKELKISESTVVRFASELGYNGFPELKTALQEFVKGKLT
CCHHHHHHCHHHHEEEEHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
TLQRLEITKESNEEKLLAEVLNLDIGSIKQTLNEVDVGTFKKVVDCILNARKIYIVGLRT
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECH
STVIAEYMGFYLNLLRDNVIVVKRGVSDLFEQILRVEREDLVIGIGFPRYSRRTVDLLKY
HHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCHHCEEEEECCCCCCHHHHHHHHH
AKSQGATVIALTDSFISPLARIADEVLTAKNSIISFVDSLVAPLSLVNAIVVAVGTRERE
HHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TITGVFEKLENIWEEYEVYLTKF
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]