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The map label for this gene is ymdB [C]

Identifier: 20807475

GI number: 20807475

Start: 999648

End: 1000175

Strand: Direct

Name: ymdB [C]

Synonym: TTE0995

Alternate gene names: 20807475

Gene position: 999648-1000175 (Clockwise)

Preceding gene: 20807474

Following gene: 20807477

Centisome position: 37.17

GC content: 41.48

Gene sequence:

>528_bases
ATGAAAGAGAAGATTAAATTGATAAAGGGGAACATCGTAGACCAGGAAGTAGATGCCATTGTAAATGCAGCTAATTCTTC
TTTGATTGGAGGTGGTGGGGTAGACGGAGCAATCCATAAAGCAGGAGGTCCTGCTATTGCAGAGGAGCTTAAAGTTATAA
GGGAAAAGCAGGGAGGGTGCCCGACTGGTCATGCGGTTATAACGGGTGCAGGCAATTTGAAAGCCAAGTATGTCATTCAC
GCTGTAGGGCCTATCTGGAAAGGCGGCAATCATAACGAAGATAATTTATTAGCAAGTGCCTACATAGAGAGCTTAAAATT
GGCGGATGAATATAATGTAAAAACTATTGCTTTTCCCTCAATAAGCACAGGAGCCTATGGTTTTCCTGTGGAAAGGGCAG
CGAGAATAGCTTTAAGGGTAGTTTCTGACTATCTTGAGGGAAGTAGCATAAAAGAAGTGAGATTTGTTCTCTTCAGCGAT
AGAGATTATGAAGTGTATTCAAAAGCTTATGAAGAGCTGGATAAATAA

Upstream 100 bases:

>100_bases
GTGTTTTTGTGGCTTATTGGTAAAAGAGGTGAAAAGCCAGAGATTTTGTGATATAATTTTAACTGTACACAAAAATAAAT
TTATAAATCAGGGTGATCTG

Downstream 100 bases:

>100_bases
AAAGGATAGGCGGTTTGACCTATCCTTTTTATTTTACTATTTTTTGGGCGATTAAGAATAACATTAGCACTCCAACTAGG
AGTCTATAATACGCAAAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKEKIKLIKGNIVDQEVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGCPTGHAVITGAGNLKAKYVIH
AVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTIAFPSISTGAYGFPVERAARIALRVVSDYLEGSSIKEVRFVLFSD
RDYEVYSKAYEELDK

Sequences:

>Translated_175_residues
MKEKIKLIKGNIVDQEVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGCPTGHAVITGAGNLKAKYVIH
AVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTIAFPSISTGAYGFPVERAARIALRVVSDYLEGSSIKEVRFVLFSD
RDYEVYSKAYEELDK
>Mature_175_residues
MKEKIKLIKGNIVDQEVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGCPTGHAVITGAGNLKAKYVIH
AVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTIAFPSISTGAYGFPVERAARIALRVVSDYLEGSSIKEVRFVLFSD
RDYEVYSKAYEELDK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI117968621, Length=178, Percent_Identity=48.876404494382, Blast_Score=162, Evalue=1e-40,
Organism=Homo sapiens, GI13569840, Length=169, Percent_Identity=46.1538461538462, Blast_Score=148, Evalue=2e-36,
Organism=Homo sapiens, GI20336746, Length=175, Percent_Identity=34.2857142857143, Blast_Score=105, Evalue=2e-23,
Organism=Homo sapiens, GI154813199, Length=172, Percent_Identity=33.7209302325581, Blast_Score=98, Evalue=3e-21,
Organism=Homo sapiens, GI93141018, Length=178, Percent_Identity=34.2696629213483, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI93141020, Length=178, Percent_Identity=34.2696629213483, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI4758496, Length=178, Percent_Identity=34.2696629213483, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI207450721, Length=168, Percent_Identity=36.3095238095238, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI8923143, Length=168, Percent_Identity=36.3095238095238, Blast_Score=95, Evalue=4e-20,
Organism=Homo sapiens, GI226371716, Length=175, Percent_Identity=32.5714285714286, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI226371714, Length=175, Percent_Identity=32.5714285714286, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI226371712, Length=175, Percent_Identity=32.5714285714286, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI226371718, Length=175, Percent_Identity=32.5714285714286, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI226371710, Length=175, Percent_Identity=32.5714285714286, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI226371706, Length=175, Percent_Identity=32.5714285714286, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI8923920, Length=178, Percent_Identity=28.0898876404494, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI165377137, Length=164, Percent_Identity=29.8780487804878, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=50.2958579881657, Blast_Score=184, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17538214, Length=171, Percent_Identity=43.859649122807, Blast_Score=118, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24586353, Length=169, Percent_Identity=33.1360946745562, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y995_THETN (Q8RB30)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_622646.1
- ProteinModelPortal:   Q8RB30
- SMR:   Q8RB30
- GeneID:   995801
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE0995
- NMPDR:   fig|273068.3.peg.461
- HOGENOM:   HBG682503
- OMA:   ARHVIHT
- ProtClustDB:   CLSK901041
- BioCyc:   TTEN273068:TTE0995-MONOMER
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 18763; Mature: 18763

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKIKLIKGNIVDQEVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGC
CCCCCEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCC
PTGHAVITGAGNLKAKYVIHAVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTIAFPS
CCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
ISTGAYGFPVERAARIALRVVSDYLEGSSIKEVRFVLFSDRDYEVYSKAYEELDK
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKEKIKLIKGNIVDQEVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGC
CCCCCEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCC
PTGHAVITGAGNLKAKYVIHAVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTIAFPS
CCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
ISTGAYGFPVERAARIALRVVSDYLEGSSIKEVRFVLFSDRDYEVYSKAYEELDK
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336