Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 20807378

GI number: 20807378

Start: 906139

End: 906840

Strand: Direct

Name: radC [C]

Synonym: TTE0897

Alternate gene names: 20807378

Gene position: 906139-906840 (Clockwise)

Preceding gene: 20807377

Following gene: 20807379

Centisome position: 33.69

GC content: 38.03

Gene sequence:

>702_bases
TTGGGAGAGGATTTGAATATAAGGATAAAAGACTTGCCTTATGAAGAAAGGCCCAGAGAAAGGCTAATAAAATACGGACC
CCAGGTGCTTTCAAATGCCGAATTGATTGCCATAATAATAGGTACAGGGAGCAGAAGAGAAAATGCTATAAGTTTGGCTC
AAAAGCTCATTACAGAGGAGAGAGGATTAAAGTTTATTGTCAACTCAAGTGTGGAAAAGCTTGCGAATATAAGGGGGATT
GGAATAGCAAAAGCTGTAAAATTAAAAGCGGCAGTGGAGTTAGGAAGAAGATTGATGCTTTCAACGCAAGGGGAAAATTT
TTCTGTAACTTCTCCTGAAGACGTCATAAACCTTTTGATGGAGGAAATGAGGTACCTTTCTAAAGAGCATTTCAAAGTAG
TGATGCTAAACGTTAAAAATAAAATAATTGCCATTGAGACGATTTCTATAGGGAGTTTAAACACCTCAATCGTTCATCCT
AGGGAGGTGTTTAAAGCTGCTATAGAAAGGTCTGCTTCTTCTATAATTTTAGTTCACAACCATCCGAGTGGAGACCCTAC
TCCTAGCAGGGAGGATGTAGAAGTGACAAAAAGATTGGTGGAAGCGGGTAATATTCTTGGAATAAAAGTCTTGGACCATG
TTATAATTGGAGATGGGAGAGGTATAAGTCTCAAAGAAAAAGGGTATTATGATTTTGAATAA

Upstream 100 bases:

>100_bases
TTAATTGTGGAAAAAATTGAGGGAGATTATTTCAATGTAGTAGGACTGCCTGTTGCCAAGCTTTTTGACCTGTTAAAAAG
GGAATTTGGGGTGAAGTGGG

Downstream 100 bases:

>100_bases
GAAAGGAAGGAGTATACACAGATGAGAGGATTTTCAAGGGATATTGGAATCGACTTAGGAACTGCTACAACCTTAGTTTA
TGTTCAAGGAAAAGGGATTG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MGEDLNIRIKDLPYEERPRERLIKYGPQVLSNAELIAIIIGTGSRRENAISLAQKLITEERGLKFIVNSSVEKLANIRGI
GIAKAVKLKAAVELGRRLMLSTQGENFSVTSPEDVINLLMEEMRYLSKEHFKVVMLNVKNKIIAIETISIGSLNTSIVHP
REVFKAAIERSASSIILVHNHPSGDPTPSREDVEVTKRLVEAGNILGIKVLDHVIIGDGRGISLKEKGYYDFE

Sequences:

>Translated_233_residues
MGEDLNIRIKDLPYEERPRERLIKYGPQVLSNAELIAIIIGTGSRRENAISLAQKLITEERGLKFIVNSSVEKLANIRGI
GIAKAVKLKAAVELGRRLMLSTQGENFSVTSPEDVINLLMEEMRYLSKEHFKVVMLNVKNKIIAIETISIGSLNTSIVHP
REVFKAAIERSASSIILVHNHPSGDPTPSREDVEVTKRLVEAGNILGIKVLDHVIIGDGRGISLKEKGYYDFE
>Mature_232_residues
GEDLNIRIKDLPYEERPRERLIKYGPQVLSNAELIAIIIGTGSRRENAISLAQKLITEERGLKFIVNSSVEKLANIRGIG
IAKAVKLKAAVELGRRLMLSTQGENFSVTSPEDVINLLMEEMRYLSKEHFKVVMLNVKNKIIAIETISIGSLNTSIVHPR
EVFKAAIERSASSIILVHNHPSGDPTPSREDVEVTKRLVEAGNILGIKVLDHVIIGDGRGISLKEKGYYDFE

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=34.4339622641509, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788997, Length=121, Percent_Identity=42.9752066115703, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788312, Length=121, Percent_Identity=42.1487603305785, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI2367100, Length=121, Percent_Identity=42.1487603305785, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y897_THETN (Q8RBC5)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_622549.1
- ProteinModelPortal:   Q8RBC5
- SMR:   Q8RBC5
- GeneID:   995931
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE0897
- NMPDR:   fig|273068.3.peg.100
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   TTEN273068:TTE0897-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25908; Mature: 25776

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEDLNIRIKDLPYEERPRERLIKYGPQVLSNAELIAIIIGTGSRRENAISLAQKLITEE
CCCCCEEEEECCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
RGLKFIVNSSVEKLANIRGIGIAKAVKLKAAVELGRRLMLSTQGENFSVTSPEDVINLLM
CCCEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHH
EEMRYLSKEHFKVVMLNVKNKIIAIETISIGSLNTSIVHPREVFKAAIERSASSIILVHN
HHHHHHHHCCEEEEEEECCCEEEEEEEEEECCCCCCEECHHHHHHHHHHCCCCEEEEEEE
HPSGDPTPSREDVEVTKRLVEAGNILGIKVLDHVIIGDGRGISLKEKGYYDFE
CCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHEEEECCCCCCCEECCCCCCCC
>Mature Secondary Structure 
GEDLNIRIKDLPYEERPRERLIKYGPQVLSNAELIAIIIGTGSRRENAISLAQKLITEE
CCCCEEEEECCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
RGLKFIVNSSVEKLANIRGIGIAKAVKLKAAVELGRRLMLSTQGENFSVTSPEDVINLLM
CCCEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHH
EEMRYLSKEHFKVVMLNVKNKIIAIETISIGSLNTSIVHPREVFKAAIERSASSIILVHN
HHHHHHHHCCEEEEEEECCCEEEEEEEEEECCCCCCEECHHHHHHHHHHCCCCEEEEEEE
HPSGDPTPSREDVEVTKRLVEAGNILGIKVLDHVIIGDGRGISLKEKGYYDFE
CCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHEEEECCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336