Click here to switch to the map view.

The map label for this gene is pqqE [H]

Identifier: 20807270

GI number: 20807270

Start: 787659

End: 788018

Strand: Direct

Name: pqqE [H]

Synonym: TTE0789a

Alternate gene names: 20807270

Gene position: 787659-788018 (Clockwise)

Preceding gene: 20807269

Following gene: 20807271

Centisome position: 29.29

GC content: 46.11

Gene sequence:

>360_bases
TTGGATCTGAGCACAGCTTGTCCTTGGGGGCGTACTAACCTAACTATTACTGCCGATGGCTCAGTCCTGCCCTGTTTATA
CAGTAGAGATTTGTGTTTAGGAAATATTTTTGAGCAATCTCTAATCGTTCTTTATCACTCATCTGTGCTGGAAGGAGTTC
GTAACGGATCGCTGCTTGCTGAACCGTGCCGTTCTTGTTTATACCGCGAATTCTGCGGGGGGTGCCGTGCTAGAACGTAC
TATCTTACTGAAGACTGGTTTGCTGCGGATCCTTGGTGTCCCCTTGTCAGGGGTTTAACTGAGGAGCAAGTTAGAGTTTT
TCCATCCAATTTACCAAAGGAAAAGGTAGGAGGATATTGA

Upstream 100 bases:

>100_bases
TGGTACATGTAAGATTTCCTCCTTATGAGTATTTCTCACAATTGGACAAGCAAAAGGGATTGTCCCGTATTACCCTCTTA
CTGATTCCATCTCTCCCTAT

Downstream 100 bases:

>100_bases
CATGACTGAACATTCAACTAATGGAAAAATACTCTATACCTACTACATTCGCCGTTATATTATTGCTGTATGCCTTATAG
AGTTTTTTGCTTTTAAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MDLSTACPWGRTNLTITADGSVLPCLYSRDLCLGNIFEQSLIVLYHSSVLEGVRNGSLLAEPCRSCLYREFCGGCRARTY
YLTEDWFAADPWCPLVRGLTEEQVRVFPSNLPKEKVGGY

Sequences:

>Translated_119_residues
MDLSTACPWGRTNLTITADGSVLPCLYSRDLCLGNIFEQSLIVLYHSSVLEGVRNGSLLAEPCRSCLYREFCGGCRARTY
YLTEDWFAADPWCPLVRGLTEEQVRVFPSNLPKEKVGGY
>Mature_119_residues
MDLSTACPWGRTNLTITADGSVLPCLYSRDLCLGNIFEQSLIVLYHSSVLEGVRNGSLLAEPCRSCLYREFCGGCRARTY
YLTEDWFAADPWCPLVRGLTEEQVRVFPSNLPKEKVGGY

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 13332; Mature: 13332

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSTACPWGRTNLTITADGSVLPCLYSRDLCLGNIFEQSLIVLYHSSVLEGVRNGSLLA
CCCCCCCCCCCCCEEEEECCCEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EPCRSCLYREFCGGCRARTYYLTEDWFAADPWCPLVRGLTEEQVRVFPSNLPKEKVGGY
HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHCCCHHHHHHCCCCCCHHHCCCC
>Mature Secondary Structure
MDLSTACPWGRTNLTITADGSVLPCLYSRDLCLGNIFEQSLIVLYHSSVLEGVRNGSLLA
CCCCCCCCCCCCCEEEEECCCEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EPCRSCLYREFCGGCRARTYYLTEDWFAADPWCPLVRGLTEEQVRVFPSNLPKEKVGGY
HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHCCCHHHHHHCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA