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The map label for this gene is yvyD [H]

Identifier: 20807017

GI number: 20807017

Start: 523703

End: 524257

Strand: Direct

Name: yvyD [H]

Synonym: TTE0516

Alternate gene names: 20807017

Gene position: 523703-524257 (Clockwise)

Preceding gene: 20807015

Following gene: 20807018

Centisome position: 19.47

GC content: 40.36

Gene sequence:

>555_bases
ATGAACATCATAGTAAGTGGTAAAAACGGGATGACCATAACAGATGGCCTAAGAAATGCCGTCGTAAAAAATGTGCAGAA
ACTCAGCAAATACTTCCCTCAGGATACAGAGGTAAGAGCAGTGTTAAGTGTTCAGAGAAATAACCACATAGCAGAACTCA
CCATACCATTTAAAGGAATTATCTTCAGGGCAGAAGAAGTAAGTGGTGACATGTACGTTTCAATCGGGGGAGCAGTGGAT
AAAATAGAGAGACAGATTTTAAAGCACAGGGCAAAGCTCAGGAATAGATTTGGCGCCAATGAGTCCATAAGATTTGATGT
TCCTACTATTTACGATGAAGGGGAAAAGAGGGAGGAAGAGGAGACTTCCTTTGAAATAGTAAAGACAAAGAGATTTCCAA
TAAAACCTATGTCGCCAGAAGAAGCGATTTTGCAGATGAACCTTTTGGGCCACACATTCTTCGTATTTACAAATGCCGAA
ACTGACATGATAAATGTGGTTTACAAAAGGAAAGACGGAAAATACGGCTTAATAGAGCCGGTGGAAGAGGAGTAA

Upstream 100 bases:

>100_bases
TGCACCCTGGCAAAGGGTGTTTTTTATTTCCACATATTGCAGTGTGCACGTTTTTTATGTAAAATTATAATAAATAGAGG
ATGAGAGGGGTTTGATGCTT

Downstream 100 bases:

>100_bases
AATTTTATAGAAGGTTGGGGATAGGCTCTATCCCCAATTTTTTTGTCAGAAAAGAAGGAATTTTGAAAAGCATATAGAAT
ATATTTAAAATGTGTGGACA

Product: ribosome-associated protein Y (PSrp-1)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNIIVSGKNGMTITDGLRNAVVKNVQKLSKYFPQDTEVRAVLSVQRNNHIAELTIPFKGIIFRAEEVSGDMYVSIGGAVD
KIERQILKHRAKLRNRFGANESIRFDVPTIYDEGEKREEEETSFEIVKTKRFPIKPMSPEEAILQMNLLGHTFFVFTNAE
TDMINVVYKRKDGKYGLIEPVEEE

Sequences:

>Translated_184_residues
MNIIVSGKNGMTITDGLRNAVVKNVQKLSKYFPQDTEVRAVLSVQRNNHIAELTIPFKGIIFRAEEVSGDMYVSIGGAVD
KIERQILKHRAKLRNRFGANESIRFDVPTIYDEGEKREEEETSFEIVKTKRFPIKPMSPEEAILQMNLLGHTFFVFTNAE
TDMINVVYKRKDGKYGLIEPVEEE
>Mature_184_residues
MNIIVSGKNGMTITDGLRNAVVKNVQKLSKYFPQDTEVRAVLSVQRNNHIAELTIPFKGIIFRAEEVSGDMYVSIGGAVD
KIERQILKHRAKLRNRFGANESIRFDVPTIYDEGEKREEEETSFEIVKTKRFPIKPMSPEEAILQMNLLGHTFFVFTNAE
TDMINVVYKRKDGKYGLIEPVEEE

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=96, Percent_Identity=34.375, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21053; Mature: 21053

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIVSGKNGMTITDGLRNAVVKNVQKLSKYFPQDTEVRAVLSVQRNNHIAELTIPFKGI
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEE
IFRAEEVSGDMYVSIGGAVDKIERQILKHRAKLRNRFGANESIRFDVPTIYDEGEKREEE
EEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH
ETSFEIVKTKRFPIKPMSPEEAILQMNLLGHTFFVFTNAETDMINVVYKRKDGKYGLIEP
HHHEEEEEECCCCCCCCCHHHHHHHHEECCEEEEEEECCCCCEEEEEEEECCCCCCCCCC
VEEE
CCCC
>Mature Secondary Structure
MNIIVSGKNGMTITDGLRNAVVKNVQKLSKYFPQDTEVRAVLSVQRNNHIAELTIPFKGI
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEE
IFRAEEVSGDMYVSIGGAVDKIERQILKHRAKLRNRFGANESIRFDVPTIYDEGEKREEE
EEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH
ETSFEIVKTKRFPIKPMSPEEAILQMNLLGHTFFVFTNAETDMINVVYKRKDGKYGLIEP
HHHEEEEEECCCCCCCCCHHHHHHHHEECCEEEEEEECCCCCEEEEEEEECCCCCCCCCC
VEEE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]