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The map label for this gene is farR [C]

Identifier: 20806947

GI number: 20806947

Start: 450167

End: 450523

Strand: Reverse

Name: farR [C]

Synonym: TTE0438

Alternate gene names: 20806947

Gene position: 450523-450167 (Counterclockwise)

Preceding gene: 20806948

Following gene: 20806946

Centisome position: 16.75

GC content: 33.89

Gene sequence:

>357_bases
ATGTTAAGAAAAGTTGATAAACACAGTGGAGTACCTGCTTATTTACAAATAGTAAATATGATAAAATCCGAAATCTTACT
GGGAAATCTCCAAAAAGGCGCTCAATTGCCTTCCGTAAGAGATTTGCAGGTAATTTTCGATGTCAATATAAACACTGTCT
TGAAAGCGCTAGAAAAACTCAAAAACGAAGGGTATATAGAATCAGAACAGGGAGTCGGCTATTTTGTAAAAAAAGACATT
GATGTAAACAAAGAAGTAATAGAGATAATAAGAGAATGTGTGTCAAAGCTCAAAAATGGCCGGATAGACTACTATACAGC
AATGTTAATTTTTGAGGAGGTCTGGAAAAATGAATGA

Upstream 100 bases:

>100_bases
CAGCGATGGCGGTTTAGCAAGAATTATTAACAAAAATAACGCTCCTGTAGAAATAAAAACTCACGGTTTTATAAAACTTG
TAAAAGAGTGAGGGTAAAAG

Downstream 100 bases:

>100_bases
AATGATAAGTAAAATGGACGTGTATATACAAAAAGAAGTAAAAGAAAAAGCTGTACGAATATTTCTCCTTACTTTTCTTC
TTCTTATACCGGGGATATTC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Regulatory Protein GntR HTH; GntR-Family Transcriptional Regulator; Transcriptional Regulator YtrA; Transcriptional Regulator; Gntr Family Transcriptional Regulator; Transcriptional Regulator Gntr Family

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MLRKVDKHSGVPAYLQIVNMIKSEILLGNLQKGAQLPSVRDLQVIFDVNINTVLKALEKLKNEGYIESEQGVGYFVKKDI
DVNKEVIEIIRECVSKLKNGRIDYYTAMLIFEEVWKNE

Sequences:

>Translated_118_residues
MLRKVDKHSGVPAYLQIVNMIKSEILLGNLQKGAQLPSVRDLQVIFDVNINTVLKALEKLKNEGYIESEQGVGYFVKKDI
DVNKEVIEIIRECVSKLKNGRIDYYTAMLIFEEVWKNE
>Mature_118_residues
MLRKVDKHSGVPAYLQIVNMIKSEILLGNLQKGAQLPSVRDLQVIFDVNINTVLKALEKLKNEGYIESEQGVGYFVKKDI
DVNKEVIEIIRECVSKLKNGRIDYYTAMLIFEEVWKNE

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13571; Mature: 13571

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKVDKHSGVPAYLQIVNMIKSEILLGNLQKGAQLPSVRDLQVIFDVNINTVLKALEKL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCEEEEEECCHHHHHHHHHHH
KNEGYIESEQGVGYFVKKDIDVNKEVIEIIRECVSKLKNGRIDYYTAMLIFEEVWKNE
HHCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRKVDKHSGVPAYLQIVNMIKSEILLGNLQKGAQLPSVRDLQVIFDVNINTVLKALEKL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCEEEEEECCHHHHHHHHHHH
KNEGYIESEQGVGYFVKKDIDVNKEVIEIIRECVSKLKNGRIDYYTAMLIFEEVWKNE
HHCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA