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The map label for this gene is ybbM [H]

Identifier: 20806838

GI number: 20806838

Start: 337765

End: 338517

Strand: Direct

Name: ybbM [H]

Synonym: TTE0321

Alternate gene names: 20806838

Gene position: 337765-338517 (Clockwise)

Preceding gene: 20806837

Following gene: 20806841

Centisome position: 12.56

GC content: 38.38

Gene sequence:

>753_bases
GTGAGTACTAGCTCTTTGATTTTTGCTTCTTCTCTTGTTTTTGTTGCGATTTTCATTTCTTACTATCAAAAGCTTGGCAT
TGAAAAGGAGATAATAATAGGAACGGCTAGGGCTGTTTTCCAGCTTATGGTTGTGGGGTATATACTTCACTATATCTTTT
CAGCAAATAATGCTCTTTTTACTTTGGCGATGGTGGCGGTTATGATACTTGTAGCTGGGCACAATGCATCAAAGAGAGGG
AAAGAGATTCCAGGAATTTTTTATTATGTAACTTTTTCCATTGCAGTAAGCGCTGCTGTAACACTTTCACTTCTTATACT
GTTTGGAAACATCAAATTTGAGCCTCAACAGGTTATACCTGTATCTGGTATGATAATAGGAAATTCTATGGTGGCTTCCG
GGCTTTCTGTATCCAGATTAAAAGATGAGATAAAAAATAGGCAGGAAGAGATAGAGGCCTACCTTGCTTTAGGAGCTACT
TCCAGGCAGGCTGCTCAAAAAGTAATAAAGATGAGCATAAAGACAGGAATGATGCCAACAGTGGACAGCATGAAAACATT
AGGTATTGTTCAACTTCCTGGCATGATGACAGGTCTTATATTAGGAGGAGTAGATCCGATTACGGCTGTAAAATATCAGA
TAATGGTTACTTTTATGCTGGCATCGACAGTTGCAATATCCTGTTTCACAGTGACTTTTTTGACGTACAGGACATTTTTT
ACAAAACAACATCAACTAAGGCAGGCCTTTTAG

Upstream 100 bases:

>100_bases
GAGAACTAATAGAGGCGAGAAAAACATGGGAATTTTTTGAAAATCCTGTAAGCGAGGTTTCAAAGTTATTTTTGGAAGGA
AAATTAAAGGAGATGATAAA

Downstream 100 bases:

>100_bases
CCTGCCTCAAAATTATGGTATTAAAACCTGCCCTTTATAAGGGTCATATACGTAGTACAAAAATCCTTCTTTTAGTGAAA
TTTGAAATATCAGTTTATCT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSTSSLIFASSLVFVAIFISYYQKLGIEKEIIIGTARAVFQLMVVGYILHYIFSANNALFTLAMVAVMILVAGHNASKRG
KEIPGIFYYVTFSIAVSAAVTLSLLILFGNIKFEPQQVIPVSGMIIGNSMVASGLSVSRLKDEIKNRQEEIEAYLALGAT
SRQAAQKVIKMSIKTGMMPTVDSMKTLGIVQLPGMMTGLILGGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFF
TKQHQLRQAF

Sequences:

>Translated_250_residues
MSTSSLIFASSLVFVAIFISYYQKLGIEKEIIIGTARAVFQLMVVGYILHYIFSANNALFTLAMVAVMILVAGHNASKRG
KEIPGIFYYVTFSIAVSAAVTLSLLILFGNIKFEPQQVIPVSGMIIGNSMVASGLSVSRLKDEIKNRQEEIEAYLALGAT
SRQAAQKVIKMSIKTGMMPTVDSMKTLGIVQLPGMMTGLILGGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFF
TKQHQLRQAF
>Mature_249_residues
STSSLIFASSLVFVAIFISYYQKLGIEKEIIIGTARAVFQLMVVGYILHYIFSANNALFTLAMVAVMILVAGHNASKRGK
EIPGIFYYVTFSIAVSAAVTLSLLILFGNIKFEPQQVIPVSGMIIGNSMVASGLSVSRLKDEIKNRQEEIEAYLALGATS
RQAAQKVIKMSIKTGMMPTVDSMKTLGIVQLPGMMTGLILGGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFFT
KQHQLRQAF

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=246, Percent_Identity=49.1869918699187, Blast_Score=242, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 27327; Mature: 27196

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSSLIFASSLVFVAIFISYYQKLGIEKEIIIGTARAVFQLMVVGYILHYIFSANNALF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
TLAMVAVMILVAGHNASKRGKEIPGIFYYVTFSIAVSAAVTLSLLILFGNIKFEPQQVIP
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
VSGMIIGNSMVASGLSVSRLKDEIKNRQEEIEAYLALGATSRQAAQKVIKMSIKTGMMPT
CCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
VDSMKTLGIVQLPGMMTGLILGGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFF
HHHHHHCCCEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKQHQLRQAF
HHHHHHHHCC
>Mature Secondary Structure 
STSSLIFASSLVFVAIFISYYQKLGIEKEIIIGTARAVFQLMVVGYILHYIFSANNALF
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
TLAMVAVMILVAGHNASKRGKEIPGIFYYVTFSIAVSAAVTLSLLILFGNIKFEPQQVIP
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
VSGMIIGNSMVASGLSVSRLKDEIKNRQEEIEAYLALGATSRQAAQKVIKMSIKTGMMPT
CCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
VDSMKTLGIVQLPGMMTGLILGGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFF
HHHHHHCCCEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKQHQLRQAF
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]