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The map label for this gene is NlpD [C]

Identifier: 20806695

GI number: 20806695

Start: 173787

End: 174599

Strand: Direct

Name: NlpD [C]

Synonym: TTE0169

Alternate gene names: 20806695

Gene position: 173787-174599 (Clockwise)

Preceding gene: 20806694

Following gene: 20806696

Centisome position: 6.46

GC content: 39.73

Gene sequence:

>813_bases
ATGAGAATAAACAGAGAAAATTTTCTTAGGTTCTTTGACAGAAAAGGGTTTTACATAGTGCTTTTCCTTTCAATTGTGGT
AATCGCTGCTACAGCAGTTTACGTTACTGATAGCAACTTAAAAAAATTAGAAGAGATTAGAAAGGCACAGCAGGAAGAAA
TAAATTCTGCAGTGGAGAGCAACTTAAACTATGACTATGAAGAGGAGATGAAGAGGGCAAAAGAAGAAAAGCCGGCAGTA
GGGCAAGATTTCAATGTAGCTCAAAAGGAGCCAGAGAAAAAGGAAGCAGAGCCTGAAGCAAAATCTGAGCAAATAAAAAC
AAAAGAAGTGTTTTCAACAGAGGCGAAAAAGTTGACTGTCACACCTTCCCCTGCAAAGACAGATAAGAAGACTTCTATAT
CAACTAGATTGGTATTGCTAAGGCCTTTGGAAGGCAAAGTGGTGATGGAATTTGCAAAGGACAAATTAGTGTATTCTAAG
ACTTTAAATGAATGGACAACTCACAAAGGAATAGACATTGCAGGTAAATTAGGAGAGCCAGTGGTGGCTGCTTCAGACGG
AATAGTCAGTAAGGTGTACAAGGACCCCAAATTGGGTAACACAGTGGTCATAAAAAATGGAATATGGGAAATGGTGTACG
CGAGTCTGGGTGACAATATAAAAGTGAAAGAAGGAGATAAAATTACAAAAGGGCAGCAAATAGGTGAAGTAGGGGATACG
GCTAAATTTGAAATAGCTGAAGGGCCTCATCTTCATTTTGAACTGAGGGAGAATGGAGTTCCCATCGATCCAACCCCCTA
TTTTGGCGAGTGA

Upstream 100 bases:

>100_bases
AAATTGAGGATTTGTTGAAAGGTAAACACTAGACAACCTTTCATTTTTTTGTATAAACAGCCTCCACAGTGGTTAAAATA
CCATTTGGAGGTGAGAATTT

Downstream 100 bases:

>100_bases
GAAAAAGGCTTGGATACTCTGTATTCAGGCCTTTTTTGTTTTTGAAATAGTATTCTAATGATTTTCTTCGGGCATATACA
TATTAATGAGATTTGAAAAA

Product: membrane proteins related to metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRINRENFLRFFDRKGFYIVLFLSIVVIAATAVYVTDSNLKKLEEIRKAQQEEINSAVESNLNYDYEEEMKRAKEEKPAV
GQDFNVAQKEPEKKEAEPEAKSEQIKTKEVFSTEAKKLTVTPSPAKTDKKTSISTRLVLLRPLEGKVVMEFAKDKLVYSK
TLNEWTTHKGIDIAGKLGEPVVAASDGIVSKVYKDPKLGNTVVIKNGIWEMVYASLGDNIKVKEGDKITKGQQIGEVGDT
AKFEIAEGPHLHFELRENGVPIDPTPYFGE

Sequences:

>Translated_270_residues
MRINRENFLRFFDRKGFYIVLFLSIVVIAATAVYVTDSNLKKLEEIRKAQQEEINSAVESNLNYDYEEEMKRAKEEKPAV
GQDFNVAQKEPEKKEAEPEAKSEQIKTKEVFSTEAKKLTVTPSPAKTDKKTSISTRLVLLRPLEGKVVMEFAKDKLVYSK
TLNEWTTHKGIDIAGKLGEPVVAASDGIVSKVYKDPKLGNTVVIKNGIWEMVYASLGDNIKVKEGDKITKGQQIGEVGDT
AKFEIAEGPHLHFELRENGVPIDPTPYFGE
>Mature_270_residues
MRINRENFLRFFDRKGFYIVLFLSIVVIAATAVYVTDSNLKKLEEIRKAQQEEINSAVESNLNYDYEEEMKRAKEEKPAV
GQDFNVAQKEPEKKEAEPEAKSEQIKTKEVFSTEAKKLTVTPSPAKTDKKTSISTRLVLLRPLEGKVVMEFAKDKLVYSK
TLNEWTTHKGIDIAGKLGEPVVAASDGIVSKVYKDPKLGNTVVIKNGIWEMVYASLGDNIKVKEGDKITKGQQIGEVGDT
AKFEIAEGPHLHFELRENGVPIDPTPYFGE

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=172, Percent_Identity=29.6511627906977, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30340; Mature: 30340

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRINRENFLRFFDRKGFYIVLFLSIVVIAATAVYVTDSNLKKLEEIRKAQQEEINSAVES
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHH
NLNYDYEEEMKRAKEEKPAVGQDFNVAQKEPEKKEAEPEAKSEQIKTKEVFSTEAKKLTV
CCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEE
TPSPAKTDKKTSISTRLVLLRPLEGKVVMEFAKDKLVYSKTLNEWTTHKGIDIAGKLGEP
CCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
VVAASDGIVSKVYKDPKLGNTVVIKNGIWEMVYASLGDNIKVKEGDKITKGQQIGEVGDT
EEECCCCHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCEEECCCCCCCCCCHHCCCCCC
AKFEIAEGPHLHFELRENGVPIDPTPYFGE
CEEEECCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRINRENFLRFFDRKGFYIVLFLSIVVIAATAVYVTDSNLKKLEEIRKAQQEEINSAVES
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHH
NLNYDYEEEMKRAKEEKPAVGQDFNVAQKEPEKKEAEPEAKSEQIKTKEVFSTEAKKLTV
CCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEE
TPSPAKTDKKTSISTRLVLLRPLEGKVVMEFAKDKLVYSKTLNEWTTHKGIDIAGKLGEP
CCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
VVAASDGIVSKVYKDPKLGNTVVIKNGIWEMVYASLGDNIKVKEGDKITKGQQIGEVGDT
EEECCCCHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCEEECCCCCCCCCCHHCCCCCC
AKFEIAEGPHLHFELRENGVPIDPTPYFGE
CEEEECCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]