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The map label for this gene is FliA [H]

Identifier: 20806647

GI number: 20806647

Start: 120117

End: 120782

Strand: Reverse

Name: FliA [H]

Synonym: TTE0118

Alternate gene names: 20806647

Gene position: 120782-120117 (Counterclockwise)

Preceding gene: 20806649

Following gene: 20806646

Centisome position: 4.49

GC content: 35.44

Gene sequence:

>666_bases
GTGGTTGATTTGGACATAAACGAAAGAGTGTACATAGCCAAAAAAGACCCCTCTGAAAGAGAAAAACTGATAGAAGAATA
TACCCCTTTCATAATAAAACAAGTTTCTCACTTTGCCAATAAATACATTGACGAACAAAACAGCGATGAACTAAGCATAG
GTTTAATAGCCTTCAACGAGGCGATAGACAGCTTTGACATCACAAAAGGCTCCTTTTTGAATTTTTCCAGTTTAATTATA
AAAAGGCGCATAATAGATTTCTTGCGTCAAAATCAGGACCTAGCTTATCCTCTTGATGTATACCCAGAAAGAGAATCTGA
CTATGAGATTGAAAATAGAAGGCTTGAGATGCTCTCCTTTGTGAATCTGCTAAGCCTTTACGGCATTGAAATAGAAGACC
TTGTAAGACAATCTCCTAAACACAGGGAAACCAGAAAATTGGCCTTAAAAATAGCTCGCACAATATGTGAAAATGAACAC
TTGCTTTCTTACCTTAAAAAGACAAAAACCCTACCTGTAAAAGAATTAATTGAACTTTTAAGAATAAGTCGAAAATCCAT
TGAAAAATACAGAAAATACATAATCGCCCTCGTGATAATACTCTCCGAAGACCTTCCTATTCTCAAAGAGTACATAAACT
TTGAAAGTGAGGTGGCAAAAACATGA

Upstream 100 bases:

>100_bases
CCCCTATTGGTACTTTTTTGTTGACAACTATATTATAATATATAATCATTACTAATAGAATACCCCTAAAAATTTTCTTC
AATTCGAATAATATAGTGGG

Downstream 100 bases:

>100_bases
AAGCCGTAGTAATTAAAAAAGAAAAAGACAAAGCATACCTTTTAACAGCAGACGGGCAGTTTATAGCCTCAAAAAAATTT
AAAGATGCAGAAATAGGTGA

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MVDLDINERVYIAKKDPSEREKLIEEYTPFIIKQVSHFANKYIDEQNSDELSIGLIAFNEAIDSFDITKGSFLNFSSLII
KRRIIDFLRQNQDLAYPLDVYPERESDYEIENRRLEMLSFVNLLSLYGIEIEDLVRQSPKHRETRKLALKIARTICENEH
LLSYLKKTKTLPVKELIELLRISRKSIEKYRKYIIALVIILSEDLPILKEYINFESEVAKT

Sequences:

>Translated_221_residues
MVDLDINERVYIAKKDPSEREKLIEEYTPFIIKQVSHFANKYIDEQNSDELSIGLIAFNEAIDSFDITKGSFLNFSSLII
KRRIIDFLRQNQDLAYPLDVYPERESDYEIENRRLEMLSFVNLLSLYGIEIEDLVRQSPKHRETRKLALKIARTICENEH
LLSYLKKTKTLPVKELIELLRISRKSIEKYRKYIIALVIILSEDLPILKEYINFESEVAKT
>Mature_221_residues
MVDLDINERVYIAKKDPSEREKLIEEYTPFIIKQVSHFANKYIDEQNSDELSIGLIAFNEAIDSFDITKGSFLNFSSLII
KRRIIDFLRQNQDLAYPLDVYPERESDYEIENRRLEMLSFVNLLSLYGIEIEDLVRQSPKHRETRKLALKIARTICENEH
LLSYLKKTKTLPVKELIELLRISRKSIEKYRKYIIALVIILSEDLPILKEYINFESEVAKT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 26107; Mature: 26107

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDLDINERVYIAKKDPSEREKLIEEYTPFIIKQVSHFANKYIDEQNSDELSIGLIAFNE
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHEEHHH
AIDSFDITKGSFLNFSSLIIKRRIIDFLRQNQDLAYPLDVYPERESDYEIENRRLEMLSF
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VNLLSLYGIEIEDLVRQSPKHRETRKLALKIARTICENEHLLSYLKKTKTLPVKELIELL
HHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
RISRKSIEKYRKYIIALVIILSEDLPILKEYINFESEVAKT
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCC
>Mature Secondary Structure
MVDLDINERVYIAKKDPSEREKLIEEYTPFIIKQVSHFANKYIDEQNSDELSIGLIAFNE
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHEEHHH
AIDSFDITKGSFLNFSSLIIKRRIIDFLRQNQDLAYPLDVYPERESDYEIENRRLEMLSF
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VNLLSLYGIEIEDLVRQSPKHRETRKLALKIARTICENEHLLSYLKKTKTLPVKELIELL
HHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
RISRKSIEKYRKYIIALVIILSEDLPILKEYINFESEVAKT
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]