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The map label for this gene is abrB [H]

Identifier: 20806635

GI number: 20806635

Start: 108233

End: 108487

Strand: Reverse

Name: abrB [H]

Synonym: TTE0106

Alternate gene names: 20806635

Gene position: 108487-108233 (Counterclockwise)

Preceding gene: 20806644

Following gene: 20806631

Centisome position: 4.03

GC content: 40.0

Gene sequence:

>255_bases
ATGTTGAAATCCACGGGTATTGTGAGAAAAGTAGATGAGCTGGGAAGGGTAGTAATACCAATTGAGCTCAGGAGGACATT
AAACATCGCAGAAAGAGACGCATTAGAAATCTATGTAGATGGAGAGCAGATAGTCCTCAAAAAGTACGAACCAGCATGCA
TTTTCTGCGGCAACGCTGAAAATGTCATAAACTACAAAGGGAAAAACATCTGCAAAAACTGCTTGGAAGAGCTCAAGAAA
ACTCCATTAGAATAA

Upstream 100 bases:

>100_bases
TAAAAAAATTCCAAAAAAGGTGTTGACTTATTTTTCAAAACTTGGTATTATTATAAGTGAAGTACAACTGTCGAAATTTG
TAACTCAGGAGGGGAGAAAT

Downstream 100 bases:

>100_bases
TCGCAGGAAAAATAATGGGAGGGAAATCCTCCCATTATTTTTCCTCCTTTTTTTCTTCTGGCTCTATGTGAACTGTGACA
TTGGCTTCTGGGAATCTGTC

Product: transcription regulator AbrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MLKSTGIVRKVDELGRVVIPIELRRTLNIAERDALEIYVDGEQIVLKKYEPACIFCGNAENVINYKGKNICKNCLEELKK
TPLE

Sequences:

>Translated_84_residues
MLKSTGIVRKVDELGRVVIPIELRRTLNIAERDALEIYVDGEQIVLKKYEPACIFCGNAENVINYKGKNICKNCLEELKK
TPLE
>Mature_84_residues
MLKSTGIVRKVDELGRVVIPIELRRTLNIAERDALEIYVDGEQIVLKKYEPACIFCGNAENVINYKGKNICKNCLEELKK
TPLE

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 9564; Mature: 9564

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSTGIVRKVDELGRVVIPIELRRTLNIAERDALEIYVDGEQIVLKKYEPACIFCGNAE
CCCCCCHHHHHHHCCCEEEEEEHHCCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCC
NVINYKGKNICKNCLEELKKTPLE
CEEEECCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLKSTGIVRKVDELGRVVIPIELRRTLNIAERDALEIYVDGEQIVLKKYEPACIFCGNAE
CCCCCCHHHHHHHCCCEEEEEEHHCCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCC
NVINYKGKNICKNCLEELKKTPLE
CEEEECCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]