Click here to switch to the map view.

The map label for this gene is RPL18A

Identifier: 20094911

GI number: 20094911

Start: 1497708

End: 1498091

Strand: Direct

Name: RPL18A

Synonym: MK1475

Alternate gene names: 20094911

Gene position: 1497708-1498091 (Clockwise)

Preceding gene: 20094910

Following gene: 20094912

Centisome position: 88.36

GC content: 58.07

Gene sequence:

>384_bases
ATGACTTGGGCGCCCACCGGACCCACTAACGTGGAACTAAGGAAACTGATCCGTGACCTGAAGAAGGCGGCATGTGAGTA
CAACGCGCCAGTCTGGCGAGATGTGGCGGAACGCCTGTCCAGACCCAGGAGACAGCGAGCTGAAGTTAACGTCGGAAAGC
TCGACGGACTAGCCCGCCGAGGTGTCATCCAGGAGGAAGAGACCGTTCTAGTACCGGGTAAGGTGTTGGGTGACGGAGTG
ATCACCCAGCCCCTACGAGTGGCCGCATGGAGATTCAGTAGGACCGCCAGGATGAAGATCGAAGCCGCCGGCGGAGAATG
TCTGACGATCCGTGAGCTACTCGAGGAGAACCCAGAGGGATCGTACATTCGGATCATCGAGTAA

Upstream 100 bases:

>100_bases
GCTCGATGTCGCTCGACACCGCGATCTTGAAAGCTCTCGACGCGATCGAGCACAAGCTCGAGTCTCTGAAGAAGAACTTG
CAGAAGGAGGTGAGCGGAGA

Downstream 100 bases:

>100_bases
GGGGGAAAGGAAGCTTGGTCGAGTACGCCCACTCGAAACCTGTCGACCCGGAAGAGTGGACCGTTATCGATGCCGAAAAC
GCCGTGCTCGGTCGCCTAGC

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MTWAPTGPTNVELRKLIRDLKKAACEYNAPVWRDVAERLSRPRRQRAEVNVGKLDGLARRGVIQEEETVLVPGKVLGDGV
ITQPLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEGSYIRIIE

Sequences:

>Translated_127_residues
MTWAPTGPTNVELRKLIRDLKKAACEYNAPVWRDVAERLSRPRRQRAEVNVGKLDGLARRGVIQEEETVLVPGKVLGDGV
ITQPLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEGSYIRIIE
>Mature_126_residues
TWAPTGPTNVELRKLIRDLKKAACEYNAPVWRDVAERLSRPRRQRAEVNVGKLDGLARRGVIQEEETVLVPGKVLGDGVI
TQPLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEGSYIRIIE

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18E_METKA (Q8TVB7)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_614758.1
- ProteinModelPortal:   Q8TVB7
- SMR:   Q8TVB7
- GeneID:   1478070
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK1475
- NMPDR:   fig|190192.1.peg.1471
- HOGENOM:   HBG392438
- OMA:   SKINRYT
- ProtClustDB:   PRK04005
- BioCyc:   MKAN190192:MK1475-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00329
- InterPro:   IPR001196
- InterPro:   IPR021131
- InterPro:   IPR022947
- InterPro:   IPR021132

Pfam domain/function: PF00828 Ribosomal_L18e; SSF52080 Ribosomal_L18e/L15

EC number: NA

Molecular weight: Translated: 14322; Mature: 14191

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS01106 RIBOSOMAL_L18E; PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWAPTGPTNVELRKLIRDLKKAACEYNAPVWRDVAERLSRPRRQRAEVNVGKLDGLARR
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHCCCCHHHHHHHHC
GVIQEEETVLVPGKVLGDGVITQPLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEG
CCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCC
SYIRIIE
CEEEEEC
>Mature Secondary Structure 
TWAPTGPTNVELRKLIRDLKKAACEYNAPVWRDVAERLSRPRRQRAEVNVGKLDGLARR
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHCCCCHHHHHHHHC
GVIQEEETVLVPGKVLGDGVITQPLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEG
CCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCC
SYIRIIE
CEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014