| Definition | Methanopyrus kandleri AV19, complete genome. |
|---|---|
| Accession | NC_003551 |
| Length | 1,694,969 |
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The map label for this gene is 20094875
Identifier: 20094875
GI number: 20094875
Start: 1469870
End: 1472335
Strand: Direct
Name: 20094875
Synonym: MK1439
Alternate gene names: NA
Gene position: 1469870-1472335 (Clockwise)
Preceding gene: 20094872
Following gene: 20094877
Centisome position: 86.72
GC content: 61.48
Gene sequence:
>2466_bases GTGAGCGAGCTTTTCGAGCGAGGTCATTGGTCGTACTGGTGCCCGGTCTGGTATTGCGGCTTCCCGTTCCTGCTGTACTA CCCACCGCTGTTTTACCTGGTAGGAGGTGCCCTGAACCTCCCGCTAGGAGATCCCGTACAGACGCTGCGTATCCTGGGGC TGACGGCGGTCTACTTGCTCGTAGTCGGGATCTTCTTCGCGTGCCGACAACTCGGCTTCACGACCTTCGAAGCGGCGTTG AGCACCCTGCTGTTCCTAACGTCTCCATCCATACTTTGGGAGATCAACCGCGGCGGCATATTCCCGATGATGATGAGCCT CGGGTTCGGACTGCTCGCCCTGGGCCTCTTGGAGCGAACGCTCTCGCGAGGGTTCACCCCCAAGTCCGCGCTCGGAGTCA TCGCGCTGATCACGCTCTCGCTCTTCACCCACCCGATCGGCGGTATGACCTGCCAAGGGGCCCTGATCCTGCGCGTGCTC CTAGAGGTAGTTCCCGAGGGATCACTCCGTCCGAACCAGTGGTTCCGAGCCCTGACCGACCGGCAGAACCTCCCACTACT ACTCCCCGCCGCACTTCCACTCCTCCTCGCGGCCCCTCAGTACCTCCCGATGCTCTTGTACCGGGGATACATCTCCCCGC TGGTCACGCCGGCCCCTCAGACGCCGTTAGATTGCATAGTCACACTCCTCTCGTGTCCCATGTGGTCACCGTTACCGTTT TTCATCCTCCTATCCGTGTTAGGGGCGTACTATGCACTTCGACGATCAGGCCCCGGTATCCGTCTGTACGGGGCGTTGAC GTGCCTGATATTCTGCGCTTCAGTGTTCTCACTACTCGCGTTCTGGTCCATCTACAAGGTGGCTCCCGGCGGGCAGTTGA TCACCCACCGATTACCCGGAGTGCTCTTCCCGCTGTTCGGCGCTCTGATCCTCGGATGCGTGATCCGACACCGCCCGAAG GTGTTCGCGACCCTGGCGATACCTCAACTCCTACTCTTCGCCGTGTACGTGTGGAGCTACACGCAACCCGTGGACCTGGA CAGCGTGCGAGAGGGTCACATCCCGTCTCCCGTCGTCCACTTATGGAAAGCGATGGACCTGCTTCCCCGGTGCGTCGGTG CCGGCCTGACCTCGCCTCAGAGCCTCCTATGGACCTTGGTCGCCGCCGGCGGTTTCTTCACGCTGGACACGAAACCCACG GAGGACGCGAAGTGCGCGTTACACTACCTCCGTCACCAGGGTGGGCCTTACGACCGGGTTACGTTCGACCCGTTCACGCA CGTCCCACTGTACCGCTGTGACAGCGCCTTCGTACCCATCGAGTCGGGCCATTATTCCCTGCTGGGTTGGTTCAACCAGG GCGATCCGGCGTTCTACTCGCTGGCATGGTACGTGGAGTGGCAACATTCGTGGGTCTTCTACCCGAACGCGGTTCTGACG GTATTTCACCTGGCGAACGTACGATACGTGATATCCGGATCACCTAAGTGGACCGCCTCGCTCGAGCGTCTCCCCGAGTT CCACCGGCTGACGGACTTCGGGAGGTATACCGTATTCTCGACATCGGTGAGCCCGGGTCCCGCCGAGCTGGTACCGCGCC CGATTCTGGTGATCGACGACATCCTCAGGCGACCGAACCCGTACTACACCATGGTTCTCAACATAATACCGGATGGAGGC ACACGGAGGATCTTCGTCGAGGGTTCACCCGAGGACGTGGCGCGCTTCCGTCAGATCATCGTGCGAACGGATCGACCGGA CACCCTCGACGAGGTGCTACGGAAGATGAAGTCGGGACGCGTGTTGGTGATCGTGCCCGCGAACGATTACGCGACGGCCA GATACCTGGCCGAGCGGTTCGGACTTCACGTCAGGCCCGTGATCGTGTGCCCGTGGGAACCGCTCCCGTCAATGAAGGTC TGCAACAGGCTGATCGACGCGTACCGATTCGTCGGAATCACGGTGCCCGGAGCCACCCCGGAAGAGAGAACCTGGTTCCT GTTCAACGGACGCCCTTGGGTGGATGTGAAGCTCGGAAAGGTCGAAGTCCGGGTGTGCGGAGTGGACTTCGTTGACCTGG CCGGGACGTTACACCAAACGCTGTACTACGGGGCCGGGGCGTACCCCTTACCCCCGAAGTGGGAGCGCGCGCTCCTCAAC GAGGTCCTAAGGGGCTTCGACTCCGGTAAGCCGCGACCCGTGAAGTTCAAGGCGGTCGAACCGGACGACGTGCGCGTGCG TGGGAAAGGATACATACTCGTGAAGATAGGATACCACCCGGCTTGGCACGCGAACGCCCCGACGTACCGGGGATCGGGAG GACTGATCATCGTTCGATCGACAGGTGTTACACGGCTCCGGTTCGGGTTCACGTGGTGGGAGAGGATGCTGTGGTGGGGA GCGTTCGCGATCGGCCTGATGGGGTCCACATGGCTGTACCTTAGAGGTAGGGACGAGGGTCGGTGA
Upstream 100 bases:
>100_bases GCTTCTGTTCCTAGGTCTTACGGCAGTTGCCAGCCTCGCATTCTTGTAATCTCCGTTCTCCGCAGGTGATTCCCGAGCTC ATGTCGTTAAGATCTGGTTC
Downstream 100 bases:
>100_bases TCTCACCCTCGATAGCGCTGGCGGCGGCCGTCGCCGGACTGGCTAGATACACTTCCGACTCGCGGTGTCCCATCCTACCC GGAAAGTTCCTGTTGGACGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 820
Protein sequence:
>821_residues MSELFERGHWSYWCPVWYCGFPFLLYYPPLFYLVGGALNLPLGDPVQTLRILGLTAVYLLVVGIFFACRQLGFTTFEAAL STLLFLTSPSILWEINRGGIFPMMMSLGFGLLALGLLERTLSRGFTPKSALGVIALITLSLFTHPIGGMTCQGALILRVL LEVVPEGSLRPNQWFRALTDRQNLPLLLPAALPLLLAAPQYLPMLLYRGYISPLVTPAPQTPLDCIVTLLSCPMWSPLPF FILLSVLGAYYALRRSGPGIRLYGALTCLIFCASVFSLLAFWSIYKVAPGGQLITHRLPGVLFPLFGALILGCVIRHRPK VFATLAIPQLLLFAVYVWSYTQPVDLDSVREGHIPSPVVHLWKAMDLLPRCVGAGLTSPQSLLWTLVAAGGFFTLDTKPT EDAKCALHYLRHQGGPYDRVTFDPFTHVPLYRCDSAFVPIESGHYSLLGWFNQGDPAFYSLAWYVEWQHSWVFYPNAVLT VFHLANVRYVISGSPKWTASLERLPEFHRLTDFGRYTVFSTSVSPGPAELVPRPILVIDDILRRPNPYYTMVLNIIPDGG TRRIFVEGSPEDVARFRQIIVRTDRPDTLDEVLRKMKSGRVLVIVPANDYATARYLAERFGLHVRPVIVCPWEPLPSMKV CNRLIDAYRFVGITVPGATPEERTWFLFNGRPWVDVKLGKVEVRVCGVDFVDLAGTLHQTLYYGAGAYPLPPKWERALLN EVLRGFDSGKPRPVKFKAVEPDDVRVRGKGYILVKIGYHPAWHANAPTYRGSGGLIIVRSTGVTRLRFGFTWWERMLWWG AFAIGLMGSTWLYLRGRDEGR
Sequences:
>Translated_821_residues MSELFERGHWSYWCPVWYCGFPFLLYYPPLFYLVGGALNLPLGDPVQTLRILGLTAVYLLVVGIFFACRQLGFTTFEAAL STLLFLTSPSILWEINRGGIFPMMMSLGFGLLALGLLERTLSRGFTPKSALGVIALITLSLFTHPIGGMTCQGALILRVL LEVVPEGSLRPNQWFRALTDRQNLPLLLPAALPLLLAAPQYLPMLLYRGYISPLVTPAPQTPLDCIVTLLSCPMWSPLPF FILLSVLGAYYALRRSGPGIRLYGALTCLIFCASVFSLLAFWSIYKVAPGGQLITHRLPGVLFPLFGALILGCVIRHRPK VFATLAIPQLLLFAVYVWSYTQPVDLDSVREGHIPSPVVHLWKAMDLLPRCVGAGLTSPQSLLWTLVAAGGFFTLDTKPT EDAKCALHYLRHQGGPYDRVTFDPFTHVPLYRCDSAFVPIESGHYSLLGWFNQGDPAFYSLAWYVEWQHSWVFYPNAVLT VFHLANVRYVISGSPKWTASLERLPEFHRLTDFGRYTVFSTSVSPGPAELVPRPILVIDDILRRPNPYYTMVLNIIPDGG TRRIFVEGSPEDVARFRQIIVRTDRPDTLDEVLRKMKSGRVLVIVPANDYATARYLAERFGLHVRPVIVCPWEPLPSMKV CNRLIDAYRFVGITVPGATPEERTWFLFNGRPWVDVKLGKVEVRVCGVDFVDLAGTLHQTLYYGAGAYPLPPKWERALLN EVLRGFDSGKPRPVKFKAVEPDDVRVRGKGYILVKIGYHPAWHANAPTYRGSGGLIIVRSTGVTRLRFGFTWWERMLWWG AFAIGLMGSTWLYLRGRDEGR >Mature_820_residues SELFERGHWSYWCPVWYCGFPFLLYYPPLFYLVGGALNLPLGDPVQTLRILGLTAVYLLVVGIFFACRQLGFTTFEAALS TLLFLTSPSILWEINRGGIFPMMMSLGFGLLALGLLERTLSRGFTPKSALGVIALITLSLFTHPIGGMTCQGALILRVLL EVVPEGSLRPNQWFRALTDRQNLPLLLPAALPLLLAAPQYLPMLLYRGYISPLVTPAPQTPLDCIVTLLSCPMWSPLPFF ILLSVLGAYYALRRSGPGIRLYGALTCLIFCASVFSLLAFWSIYKVAPGGQLITHRLPGVLFPLFGALILGCVIRHRPKV FATLAIPQLLLFAVYVWSYTQPVDLDSVREGHIPSPVVHLWKAMDLLPRCVGAGLTSPQSLLWTLVAAGGFFTLDTKPTE DAKCALHYLRHQGGPYDRVTFDPFTHVPLYRCDSAFVPIESGHYSLLGWFNQGDPAFYSLAWYVEWQHSWVFYPNAVLTV FHLANVRYVISGSPKWTASLERLPEFHRLTDFGRYTVFSTSVSPGPAELVPRPILVIDDILRRPNPYYTMVLNIIPDGGT RRIFVEGSPEDVARFRQIIVRTDRPDTLDEVLRKMKSGRVLVIVPANDYATARYLAERFGLHVRPVIVCPWEPLPSMKVC NRLIDAYRFVGITVPGATPEERTWFLFNGRPWVDVKLGKVEVRVCGVDFVDLAGTLHQTLYYGAGAYPLPPKWERALLNE VLRGFDSGKPRPVKFKAVEPDDVRVRGKGYILVKIGYHPAWHANAPTYRGSGGLIIVRSTGVTRLRFGFTWWERMLWWGA FAIGLMGSTWLYLRGRDEGR
Specific function: Unknown
COG id: COG5617
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92219; Mature: 92088
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELFERGHWSYWCPVWYCGFPFLLYYPPLFYLVGGALNLPLGDPVQTLRILGLTAVYLL CCCHHHCCCCEEECCHHHHCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHH VVGIFFACRQLGFTTFEAALSTLLFLTSPSILWEINRGGIFPMMMSLGFGLLALGLLERT HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH LSRGFTPKSALGVIALITLSLFTHPIGGMTCQGALILRVLLEVVPEGSLRPNQWFRALTD HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC RQNLPLLLPAALPLLLAAPQYLPMLLYRGYISPLVTPAPQTPLDCIVTLLSCPMWSPLPF CCCCCEEHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHH FILLSVLGAYYALRRSGPGIRLYGALTCLIFCASVFSLLAFWSIYKVAPGGQLITHRLPG HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCH VLFPLFGALILGCVIRHRPKVFATLAIPQLLLFAVYVWSYTQPVDLDSVREGHIPSPVVH HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHH LWKAMDLLPRCVGAGLTSPQSLLWTLVAAGGFFTLDTKPTEDAKCALHYLRHQGGPYDRV HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCE TFDPFTHVPLYRCDSAFVPIESGHYSLLGWFNQGDPAFYSLAWYVEWQHSWVFYPNAVLT EECCCCCCCCEECCCCEEEECCCCEEEEEEECCCCCCEEEEEEEEEEECCEEECCHHHHH VFHLANVRYVISGSPKWTASLERLPEFHRLTDFGRYTVFSTSVSPGPAELVPRPILVIDD HHHHHCEEEEEECCCCCHHHHHHCHHHHHHHHCCCEEEEECCCCCCCHHHCCCCHHHHHH ILRRPNPYYTMVLNIIPDGGTRRIFVEGSPEDVARFRQIIVRTDRPDTLDEVLRKMKSGR HHHCCCCEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHEECCCCCHHHHHHHHHHCCC VLVIVPANDYATARYLAERFGLHVRPVIVCPWEPLPSMKVCNRLIDAYRFVGITVPGATP EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEECCCCCC EERTWFLFNGRPWVDVKLGKVEVRVCGVDFVDLAGTLHQTLYYGAGAYPLPPKWERALLN CCCEEEEECCCEEEEEEECEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH EVLRGFDSGKPRPVKFKAVEPDDVRVRGKGYILVKIGYHPAWHANAPTYRGSGGLIIVRS HHHHHCCCCCCCCEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCEECCCCEEEEEC TGVTRLRFGFTWWERMLWWGAFAIGLMGSTWLYLRGRDEGR CCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC >Mature Secondary Structure SELFERGHWSYWCPVWYCGFPFLLYYPPLFYLVGGALNLPLGDPVQTLRILGLTAVYLL CCHHHCCCCEEECCHHHHCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHH VVGIFFACRQLGFTTFEAALSTLLFLTSPSILWEINRGGIFPMMMSLGFGLLALGLLERT HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH LSRGFTPKSALGVIALITLSLFTHPIGGMTCQGALILRVLLEVVPEGSLRPNQWFRALTD HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC RQNLPLLLPAALPLLLAAPQYLPMLLYRGYISPLVTPAPQTPLDCIVTLLSCPMWSPLPF CCCCCEEHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHH FILLSVLGAYYALRRSGPGIRLYGALTCLIFCASVFSLLAFWSIYKVAPGGQLITHRLPG HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCH VLFPLFGALILGCVIRHRPKVFATLAIPQLLLFAVYVWSYTQPVDLDSVREGHIPSPVVH HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHH LWKAMDLLPRCVGAGLTSPQSLLWTLVAAGGFFTLDTKPTEDAKCALHYLRHQGGPYDRV HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCE TFDPFTHVPLYRCDSAFVPIESGHYSLLGWFNQGDPAFYSLAWYVEWQHSWVFYPNAVLT EECCCCCCCCEECCCCEEEECCCCEEEEEEECCCCCCEEEEEEEEEEECCEEECCHHHHH VFHLANVRYVISGSPKWTASLERLPEFHRLTDFGRYTVFSTSVSPGPAELVPRPILVIDD HHHHHCEEEEEECCCCCHHHHHHCHHHHHHHHCCCEEEEECCCCCCCHHHCCCCHHHHHH ILRRPNPYYTMVLNIIPDGGTRRIFVEGSPEDVARFRQIIVRTDRPDTLDEVLRKMKSGR HHHCCCCEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHEECCCCCHHHHHHHHHHCCC VLVIVPANDYATARYLAERFGLHVRPVIVCPWEPLPSMKVCNRLIDAYRFVGITVPGATP EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEECCCCCC EERTWFLFNGRPWVDVKLGKVEVRVCGVDFVDLAGTLHQTLYYGAGAYPLPPKWERALLN CCCEEEEECCCEEEEEEECEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH EVLRGFDSGKPRPVKFKAVEPDDVRVRGKGYILVKIGYHPAWHANAPTYRGSGGLIIVRS HHHHHCCCCCCCCEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCEECCCCEEEEEC TGVTRLRFGFTWWERMLWWGAFAIGLMGSTWLYLRGRDEGR CCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA