| Definition | Methanopyrus kandleri AV19, complete genome. |
|---|---|
| Accession | NC_003551 |
| Length | 1,694,969 |
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The map label for this gene is 20094735
Identifier: 20094735
GI number: 20094735
Start: 1304800
End: 1305828
Strand: Direct
Name: 20094735
Synonym: MK1299
Alternate gene names: NA
Gene position: 1304800-1305828 (Clockwise)
Preceding gene: 20094734
Following gene: 20094738
Centisome position: 76.98
GC content: 70.75
Gene sequence:
>1029_bases GTGACGGACGCCCTCCCGTACTTCCTCGTGTGCCGGACGCCGACGAGGGCGGGTGCGGGTCAGCGGGCGACGGACGTGAT CGACCTACCCCTCCAGCGCGAGGCGCACACGAAGCTCCCCGTGATCTACGGCTCCACGCTGAAGGGCGCCCTCCGCCACG CGACGCTCCGGAAACTCTCCGAGGAGCTCGACGGGGAGACCTCCGAGGGGCTCGTCGACGCGGTCTTCGGGGACAGACCC GGCGAGGGTAGCCCGTCACCGGGCGTCGTCGCCTTCAGCGACGCCGTCCTCCTGGCCATGCCCGTGAGGTGCGAGCCCGG CTTCCTGGCCTGGGTGACCTCACCGTACCAGCTCGGTAGGCTGTACGAGGTCCTGGAGCTGACCGGGGAGCTGGAGGACC TCCGGGAGGCCGTCGAGGAGGTCCTGAACGACTGTAAGGACCCGCGGGGGAACGGTGCCCTCGCGCCCGAGGAGGGCACT CTCCTACTCGACAGGATCAGGGTGAGGGCGGAGGCCAGCGACGCCGTCGGGGATCTCGCCGGGGTGCTCTCGGAGACGGT GTTCGAGGGCGCGCCCGAGCCCCACTTCCGGCGCTACGTGGAGGAACGGCTCGTGGTCCTGGGCGACGGCGCGTTCGCGG ACCTCGTCAACTCGTGCACGGAGCGCGTCGTCCGCGTCCGGCTCAACGAGGAGAAGACCGTGGAACAGGGCCCCTGGTAC GAGGAACGCGTGCCCGAGGGGACCGTCTTCTTCGGCACGCTGAACGTGCGGCACGACACCGTACCGCCCAAAAACGGCGT CGACGCCCGGAAGGTGCTGTTCGGGAGGTGGGAACCGGACGGCGTGCCCGACGGGGACGACAGGAAGTTGGAGGCCCTCA AGGAGGCCGCCGGGGAGCTGGAGGCGGGCGTGCTCGGGGCGGTCGCCGACGGGAGCGGGGACGGCTACCTGGACCTCCGG TTCCAGGTCGGGGGCAGCGAGACGGTGGGCTTCGGTCTCGTACGTCTCAGGCAGTTCGTGGGGGAGTGA
Upstream 100 bases:
>100_bases GGATGGGGGATGAAGACAGAGAGCTGCTCGCCTCCAGGCTCGCGTTCCACCTCTCCGGCGTGGGTACGGCCTACGCCCTG AGCCTACCGGGGGTGAGCCC
Downstream 100 bases:
>100_bases GCGGTGACCGTGACCCCGTTCCGGTGGGCCGTCGAGTGCGTGAGGGATGTGGAGCGGCTGACGGGCACGGTCTGGAAGGA CTCCGACGACCCGTTGGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: CRISPR-Associated RAMP Cmr4 Family Protein Family Protein; Cmr4 Family CRISPR-Associated RAMP Protein; CRISPR-Associated RAMP Cmr4 Family Protein; CRISPR-Associated Ramp Protein Cmr4 Family; Crispr-Associated Ramp Protein Cmr4 Family; CRISPR-Associated RAMP Protein; Cmr Crispr-Associated Ramp Protein Cmr4 Family; RAMP Superfamily DNA Repair Protein
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MTDALPYFLVCRTPTRAGAGQRATDVIDLPLQREAHTKLPVIYGSTLKGALRHATLRKLSEELDGETSEGLVDAVFGDRP GEGSPSPGVVAFSDAVLLAMPVRCEPGFLAWVTSPYQLGRLYEVLELTGELEDLREAVEEVLNDCKDPRGNGALAPEEGT LLLDRIRVRAEASDAVGDLAGVLSETVFEGAPEPHFRRYVEERLVVLGDGAFADLVNSCTERVVRVRLNEEKTVEQGPWY EERVPEGTVFFGTLNVRHDTVPPKNGVDARKVLFGRWEPDGVPDGDDRKLEALKEAAGELEAGVLGAVADGSGDGYLDLR FQVGGSETVGFGLVRLRQFVGE
Sequences:
>Translated_342_residues MTDALPYFLVCRTPTRAGAGQRATDVIDLPLQREAHTKLPVIYGSTLKGALRHATLRKLSEELDGETSEGLVDAVFGDRP GEGSPSPGVVAFSDAVLLAMPVRCEPGFLAWVTSPYQLGRLYEVLELTGELEDLREAVEEVLNDCKDPRGNGALAPEEGT LLLDRIRVRAEASDAVGDLAGVLSETVFEGAPEPHFRRYVEERLVVLGDGAFADLVNSCTERVVRVRLNEEKTVEQGPWY EERVPEGTVFFGTLNVRHDTVPPKNGVDARKVLFGRWEPDGVPDGDDRKLEALKEAAGELEAGVLGAVADGSGDGYLDLR FQVGGSETVGFGLVRLRQFVGE >Mature_341_residues TDALPYFLVCRTPTRAGAGQRATDVIDLPLQREAHTKLPVIYGSTLKGALRHATLRKLSEELDGETSEGLVDAVFGDRPG EGSPSPGVVAFSDAVLLAMPVRCEPGFLAWVTSPYQLGRLYEVLELTGELEDLREAVEEVLNDCKDPRGNGALAPEEGTL LLDRIRVRAEASDAVGDLAGVLSETVFEGAPEPHFRRYVEERLVVLGDGAFADLVNSCTERVVRVRLNEEKTVEQGPWYE ERVPEGTVFFGTLNVRHDTVPPKNGVDARKVLFGRWEPDGVPDGDDRKLEALKEAAGELEAGVLGAVADGSGDGYLDLRF QVGGSETVGFGLVRLRQFVGE
Specific function: Unknown
COG id: COG1336
COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37086; Mature: 36955
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDALPYFLVCRTPTRAGAGQRATDVIDLPLQREAHTKLPVIYGSTLKGALRHATLRKLS CCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH EELDGETSEGLVDAVFGDRPGEGSPSPGVVAFSDAVLLAMPVRCEPGFLAWVTSPYQLGR HHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEECCHHHHHH LYEVLELTGELEDLREAVEEVLNDCKDPRGNGALAPEEGTLLLDRIRVRAEASDAVGDLA HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH GVLSETVFEGAPEPHFRRYVEERLVVLGDGAFADLVNSCTERVVRVRLNEEKTVEQGPWY HHHHHHHHCCCCCHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH EERVPEGTVFFGTLNVRHDTVPPKNGVDARKVLFGRWEPDGVPDGDDRKLEALKEAAGEL HHHCCCCEEEEEEEEEEECCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHH EAGVLGAVADGSGDGYLDLRFQVGGSETVGFGLVRLRQFVGE HCCEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCC >Mature Secondary Structure TDALPYFLVCRTPTRAGAGQRATDVIDLPLQREAHTKLPVIYGSTLKGALRHATLRKLS CCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH EELDGETSEGLVDAVFGDRPGEGSPSPGVVAFSDAVLLAMPVRCEPGFLAWVTSPYQLGR HHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEECCHHHHHH LYEVLELTGELEDLREAVEEVLNDCKDPRGNGALAPEEGTLLLDRIRVRAEASDAVGDLA HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH GVLSETVFEGAPEPHFRRYVEERLVVLGDGAFADLVNSCTERVVRVRLNEEKTVEQGPWY HHHHHHHHCCCCCHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH EERVPEGTVFFGTLNVRHDTVPPKNGVDARKVLFGRWEPDGVPDGDDRKLEALKEAAGEL HHHCCCCEEEEEEEEEEECCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHH EAGVLGAVADGSGDGYLDLRFQVGGSETVGFGLVRLRQFVGE HCCEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA