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The map label for this gene is ydhY [C]

Identifier: 20093897

GI number: 20093897

Start: 426513

End: 427271

Strand: Reverse

Name: ydhY [C]

Synonym: MK0459

Alternate gene names: 20093897

Gene position: 427271-426513 (Counterclockwise)

Preceding gene: 20093898

Following gene: 20093896

Centisome position: 25.21

GC content: 47.04

Gene sequence:

>759_bases
ATGAAAACGCTTGAAATTTCGATCGATAAGGTAGTTGAAATGGTGTTAGATCGTGTGGAAGACGCTGATGAAGATACAGT
GTTGGAAGTACTTTCTGAGACACCAGCCGTACGTCGGGAGTTCGTGACTATAGACCCCGAGCGATGTGTAGGGTGTAAGA
CATGTTACGAAGAGTGCCCGGTAGACGCGCTAACAGAACCGGACAGCACCAATCCTCCAGAGGTTGATCACGACGCATGT
GTGAGGTGTCGGTTATGTGCTAAGTCTTGCCCCGTAGATGCCATCAAGGTGGTATCCGGTGAAGCCCGAGTAACTAAAGA
TAGCATTGAAGTAAAGCTCGAGGAAGTTGATGTAATACGACGTAAGTTCGTACTTAGGAAGGCAATTCTGAGAAAAGATC
GATGCATAGCCTGTCGTCTTTGTGAACAGATTTGTCCTGTCGAGGCACCAAATATTGATAAGTTAAGGATAGACGAGGAT
AAATGTATAGGTTGTAAAGCTTGTGAACATGCATGTCCCGTCGATGCCATCGTTATTGAGCGTACCTTAACACCGCCTGA
ATTCGAGCGTGAAATTGAGTTGGATCAGGATATGTGTATAGGGTGTGAGGTCTGTGTAGAAGTCTGTCCAGTGGATGCCG
TCGAGATGGAAGGGGATGTCGCCAATATTTCCTACGACCGGTGCATAAGATGCGGAGAGTGTGCTCGAAATTGTCCGACT
GGTGCGATAAAGATCAAGGAAGTTAGGGAGGAGGTGTGA

Upstream 100 bases:

>100_bases
GGTCTCCCCCTAAGTTAGACGTTGATCGGTGTGTAGGATGTCTCGAGTGCGTTCGAATCTGTCCGTCCCGTGCTATCGAA
CCCGTGGGGGGATTCCGGGG

Downstream 100 bases:

>100_bases
TGAGGGCCGAGATGTGGGCCACTAAAGAGTATCCTAGAGTGAAACCCGAGGACAGTCTCGAGCAGGCGGTTCGAGAGCTC
ACGAGGTACTCCGAGTACAC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKTLEISIDKVVEMVLDRVEDADEDTVLEVLSETPAVRREFVTIDPERCVGCKTCYEECPVDALTEPDSTNPPEVDHDAC
VRCRLCAKSCPVDAIKVVSGEARVTKDSIEVKLEEVDVIRRKFVLRKAILRKDRCIACRLCEQICPVEAPNIDKLRIDED
KCIGCKACEHACPVDAIVIERTLTPPEFEREIELDQDMCIGCEVCVEVCPVDAVEMEGDVANISYDRCIRCGECARNCPT
GAIKIKEVREEV

Sequences:

>Translated_252_residues
MKTLEISIDKVVEMVLDRVEDADEDTVLEVLSETPAVRREFVTIDPERCVGCKTCYEECPVDALTEPDSTNPPEVDHDAC
VRCRLCAKSCPVDAIKVVSGEARVTKDSIEVKLEEVDVIRRKFVLRKAILRKDRCIACRLCEQICPVEAPNIDKLRIDED
KCIGCKACEHACPVDAIVIERTLTPPEFEREIELDQDMCIGCEVCVEVCPVDAVEMEGDVANISYDRCIRCGECARNCPT
GAIKIKEVREEV
>Mature_252_residues
MKTLEISIDKVVEMVLDRVEDADEDTVLEVLSETPAVRREFVTIDPERCVGCKTCYEECPVDALTEPDSTNPPEVDHDAC
VRCRLCAKSCPVDAIKVVSGEARVTKDSIEVKLEEVDVIRRKFVLRKAILRKDRCIACRLCEQICPVEAPNIDKLRIDED
KCIGCKACEHACPVDAIVIERTLTPPEFEREIELDQDMCIGCEVCVEVCPVDAVEMEGDVANISYDRCIRCGECARNCPT
GAIKIKEVREEV

Specific function: Unknown

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 28224; Mature: 28224

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
11.1 %Cys+Met (Translated Protein)
9.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
11.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLEISIDKVVEMVLDRVEDADEDTVLEVLSETPAVRREFVTIDPERCVGCKTCYEECP
CCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHEEEECHHHHHHHHHHHHHCC
VDALTEPDSTNPPEVDHDACVRCRLCAKSCPVDAIKVVSGEARVTKDSIEVKLEEVDVIR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHCCCCCEEEHHHHHHHHHHHHHHH
RKFVLRKAILRKDRCIACRLCEQICPVEAPNIDKLRIDEDKCIGCKACEHACPVDAIVIE
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCEEEE
RTLTPPEFEREIELDQDMCIGCEVCVEVCPVDAVEMEGDVANISYDRCIRCGECARNCPT
CCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCC
GAIKIKEVREEV
CCEEHHHHHHCC
>Mature Secondary Structure
MKTLEISIDKVVEMVLDRVEDADEDTVLEVLSETPAVRREFVTIDPERCVGCKTCYEECP
CCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHEEEECHHHHHHHHHHHHHCC
VDALTEPDSTNPPEVDHDACVRCRLCAKSCPVDAIKVVSGEARVTKDSIEVKLEEVDVIR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHCCCCCEEEHHHHHHHHHHHHHHH
RKFVLRKAILRKDRCIACRLCEQICPVEAPNIDKLRIDEDKCIGCKACEHACPVDAIVIE
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCEEEE
RTLTPPEFEREIELDQDMCIGCEVCVEVCPVDAVEMEGDVANISYDRCIRCGECARNCPT
CCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCC
GAIKIKEVREEV
CCEEHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]