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The map label for this gene is 20093881

Identifier: 20093881

GI number: 20093881

Start: 413745

End: 414398

Strand: Reverse

Name: 20093881

Synonym: MK0443

Alternate gene names: NA

Gene position: 414398-413745 (Counterclockwise)

Preceding gene: 20093882

Following gene: 20093877

Centisome position: 24.45

GC content: 63.0

Gene sequence:

>654_bases
GTGGAGGACCTTCACCATAGGGGGACGTCCGTGTCCGAGATCGAGAACCTGCGTGAGACCATCGAGAACATCCGCGAGGA
GCTCGACGCGTTGGACGAGGCCAGGGACGAGGCGCAGGTGATCCTGCGGGACCTCCACAAGCTGAGCTCGGAGGCAGTGT
ACGAGGTGCACCGTGGGAACTTGGAGGAGGCCCGGGATAAGCTGGACGAGGCCGCCGAACTGGTCTCAGAACTGCACGAT
CTCCTGGGCGACTTCCCTGAGCTGCTCCGCACGGGATTCGCCGAGAACCACCTACAGGAGTACGCTGAGGCGGAGATCCT
GTACTCGATCGTGAAAGACCGTAGGGCACCCTCGCCCGAGGAGATCAACGTGAGCCCACGGGCTTACCTGCTGGGACTGC
TGGACGCCGTGGGCGAGCTCCGGAGGATCGTGGTGGACGCGCTGCGGGAGGGTGATCTGGACAGGGCCGAGGAGTTCCTC
AACGTGATGGAGGAGATCTACTCGCTGACGATGACGTTCGACTACCCGAGGGCTGTTGTCCCCAACCTCAAGAGGAAGCA
GGACGTGGCCCGGTCCCTCCTAGAGAGGACCAGGAGCGAGGTCACCATCGCGGGTAAAACCGAGGAGCTAAAGAAGACGC
TGGAGCGGGAGTGA

Upstream 100 bases:

>100_bases
GGGCGGATCGAGTACGTAGGTTCTGGCCGCATCGGCACCGTACGGAGGGGTTCTTCGTAGCCCGGCTGGTCCGGAGCTAG
CGCGATGATGGCTTATCCCG

Downstream 100 bases:

>100_bases
CTGCTCCGGCCATCGGACCATCGCCGCCAGGATCGAGCTGTAGTACGTGATGACATCGCCTCCCGTGTCCTCCGCGTTCT
CCGCGTATAAAGCGACTTCG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MEDLHHRGTSVSEIENLRETIENIREELDALDEARDEAQVILRDLHKLSSEAVYEVHRGNLEEARDKLDEAAELVSELHD
LLGDFPELLRTGFAENHLQEYAEAEILYSIVKDRRAPSPEEINVSPRAYLLGLLDAVGELRRIVVDALREGDLDRAEEFL
NVMEEIYSLTMTFDYPRAVVPNLKRKQDVARSLLERTRSEVTIAGKTEELKKTLERE

Sequences:

>Translated_217_residues
MEDLHHRGTSVSEIENLRETIENIREELDALDEARDEAQVILRDLHKLSSEAVYEVHRGNLEEARDKLDEAAELVSELHD
LLGDFPELLRTGFAENHLQEYAEAEILYSIVKDRRAPSPEEINVSPRAYLLGLLDAVGELRRIVVDALREGDLDRAEEFL
NVMEEIYSLTMTFDYPRAVVPNLKRKQDVARSLLERTRSEVTIAGKTEELKKTLERE
>Mature_217_residues
MEDLHHRGTSVSEIENLRETIENIREELDALDEARDEAQVILRDLHKLSSEAVYEVHRGNLEEARDKLDEAAELVSELHD
LLGDFPELLRTGFAENHLQEYAEAEILYSIVKDRRAPSPEEINVSPRAYLLGLLDAVGELRRIVVDALREGDLDRAEEFL
NVMEEIYSLTMTFDYPRAVVPNLKRKQDVARSLLERTRSEVTIAGKTEELKKTLERE

Specific function: Unknown

COG id: COG2178

COG function: function code J; Predicted RNA-binding protein of the translin family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002848
- InterPro:   IPR016069
- InterPro:   IPR016068 [H]

Pfam domain/function: PF01997 Translin [H]

EC number: NA

Molecular weight: Translated: 24964; Mature: 24964

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDLHHRGTSVSEIENLRETIENIREELDALDEARDEAQVILRDLHKLSSEAVYEVHRGN
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LEEARDKLDEAAELVSELHDLLGDFPELLRTGFAENHLQEYAEAEILYSIVKDRRAPSPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EINVSPRAYLLGLLDAVGELRRIVVDALREGDLDRAEEFLNVMEEIYSLTMTFDYPRAVV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
PNLKRKQDVARSLLERTRSEVTIAGKTEELKKTLERE
CCCHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHCCC
>Mature Secondary Structure
MEDLHHRGTSVSEIENLRETIENIREELDALDEARDEAQVILRDLHKLSSEAVYEVHRGN
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LEEARDKLDEAAELVSELHDLLGDFPELLRTGFAENHLQEYAEAEILYSIVKDRRAPSPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EINVSPRAYLLGLLDAVGELRRIVVDALREGDLDRAEEFLNVMEEIYSLTMTFDYPRAVV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
PNLKRKQDVARSLLERTRSEVTIAGKTEELKKTLERE
CCCHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]