Click here to switch to the map view.

The map label for this gene is ychF [C]

Identifier: 20093811

GI number: 20093811

Start: 362211

End: 363419

Strand: Direct

Name: ychF [C]

Synonym: MK0373

Alternate gene names: 20093811

Gene position: 362211-363419 (Clockwise)

Preceding gene: 20093809

Following gene: 20093812

Centisome position: 21.37

GC content: 59.06

Gene sequence:

>1209_bases
TTGGGAGTGCAGGTAGGCATAGTCGGCAAGCCGAACGTGGGTAAGAGCACGTTCTTCGCGGCTGCCACACTGTCACCCGT
GGAAACTGCGGACTACCCTTTCACTACAGTCGATCCGAACCAAGGTGTCGCCCACGTCCGAACGGAATGCCCCTGTAAAG
CGTTCGGTGTGGAGTGCCAGCCTCGGAACTCCTCGTGCATCGACGGCAACAGGTTCGTGCCAGTGGAGCTGATCGACGTC
GCGGGACTAGTTCCTGGCGCCCACGAAGGGAGAGGGCTCGGCAACAAGTTTCTGGACGACCTCAGGCAAGCATCCGTGCT
GATACATGTCGTGGATGTTTCGGGATCCACGGACGAGGAAGGTCGTCCGTGCGATCCGGGTACTAGAGAACCTGCCGAGG
ACGTGAGGTTCCTGGAGCGCGAGCTGGACGAGTGGATAGCGGGCATACTGCGCAGGGACTGGGACCGGACTGCCAAGCGC
GCAAGCCTGGAGAAAATCCCGGCGGCGGAAGTTCTCAGGGAACGGCTGGCGGGCATCGGGGTGTCGGCATCGGACGTCGA
GAGTGCCATGGAAAGGGCGGAGGTACCGAGCGACCTCACGAAATGGTCGGACGAGGACATCCGACGGTTCGCCCGGGAAG
TGCGGCGTGTCAACAAGCCGATGGTCATCGCCGCCAATAAGATCGACGTCGAGTGCGCCGAAGAGAACCTGAAGAGATTG
GAAGAGGAAGTCGAGTACCCGGTGGTTCCCACGTGTGCCGAGGCGGAGCTCGCGCTCAGGCGTGCGGCCGACCAGGGGTT
GATCCGCTACCTACCGGGGGATTCAGATTTCGAGATACTGCAGGAAGAAAAGCTGAGCGACGAGCAGCTCCAGGCGCTCG
AATTCATCAGGGAGAAGGTTTTGAAACGCTGGGGTTCCACCGGAGTGCAGGAGGCCCTGAATCGGGCGGTATTCGATGTG
GCTAAGATGATCGTAGTGTACCCGGTAGAGAACGAGAACAAGTTGTCGGACTCCGAAGGCAGGGTACTGCCGGATGCACT
GCTCCTCCCGGAAGGTACTATGGTACGCGAATTGGCCTATAACATCCACACCGAAATCGGGGAGAGTTTTAATAGAGCCA
TCTTAGTGAAACCCGACGGGAGCCGTGAGGTAGTTGGTGAAGATCACGAGTTGGAACATGGAGATGTTGTCAAGATTCAG
ACGTCCTGA

Upstream 100 bases:

>100_bases
GATCGGATAACTCCTCGGCGAGGGCGAGTGCCCTCGTGAGATGTCCGCCATCCCCTGAAGCTATTAACACGTGCACGGAC
GTTCCCCCGGGGACTACCGG

Downstream 100 bases:

>100_bases
CCCCGCCCCTAAGGGGGTGAACATGCTTTGAGAATCCTCGCGCTAATATTGCTGCTATCGCTCCCCCTCACCCCCGCACT
CGCGGAACCCACACCCTCCG

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MGVQVGIVGKPNVGKSTFFAAATLSPVETADYPFTTVDPNQGVAHVRTECPCKAFGVECQPRNSSCIDGNRFVPVELIDV
AGLVPGAHEGRGLGNKFLDDLRQASVLIHVVDVSGSTDEEGRPCDPGTREPAEDVRFLERELDEWIAGILRRDWDRTAKR
ASLEKIPAAEVLRERLAGIGVSASDVESAMERAEVPSDLTKWSDEDIRRFAREVRRVNKPMVIAANKIDVECAEENLKRL
EEEVEYPVVPTCAEAELALRRAADQGLIRYLPGDSDFEILQEEKLSDEQLQALEFIREKVLKRWGSTGVQEALNRAVFDV
AKMIVVYPVENENKLSDSEGRVLPDALLLPEGTMVRELAYNIHTEIGESFNRAILVKPDGSREVVGEDHELEHGDVVKIQ
TS

Sequences:

>Translated_402_residues
MGVQVGIVGKPNVGKSTFFAAATLSPVETADYPFTTVDPNQGVAHVRTECPCKAFGVECQPRNSSCIDGNRFVPVELIDV
AGLVPGAHEGRGLGNKFLDDLRQASVLIHVVDVSGSTDEEGRPCDPGTREPAEDVRFLERELDEWIAGILRRDWDRTAKR
ASLEKIPAAEVLRERLAGIGVSASDVESAMERAEVPSDLTKWSDEDIRRFAREVRRVNKPMVIAANKIDVECAEENLKRL
EEEVEYPVVPTCAEAELALRRAADQGLIRYLPGDSDFEILQEEKLSDEQLQALEFIREKVLKRWGSTGVQEALNRAVFDV
AKMIVVYPVENENKLSDSEGRVLPDALLLPEGTMVRELAYNIHTEIGESFNRAILVKPDGSREVVGEDHELEHGDVVKIQ
TS
>Mature_401_residues
GVQVGIVGKPNVGKSTFFAAATLSPVETADYPFTTVDPNQGVAHVRTECPCKAFGVECQPRNSSCIDGNRFVPVELIDVA
GLVPGAHEGRGLGNKFLDDLRQASVLIHVVDVSGSTDEEGRPCDPGTREPAEDVRFLERELDEWIAGILRRDWDRTAKRA
SLEKIPAAEVLRERLAGIGVSASDVESAMERAEVPSDLTKWSDEDIRRFAREVRRVNKPMVIAANKIDVECAEENLKRLE
EEVEYPVVPTCAEAELALRRAADQGLIRYLPGDSDFEILQEEKLSDEQLQALEFIREKVLKRWGSTGVQEALNRAVFDVA
KMIVVYPVENENKLSDSEGRVLPDALLLPEGTMVRELAYNIHTEIGESFNRAILVKPDGSREVVGEDHELEHGDVVKIQT
S

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=284, Percent_Identity=27.112676056338, Blast_Score=92, Evalue=9e-19,
Organism=Escherichia coli, GI1787454, Length=166, Percent_Identity=34.9397590361446, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789574, Length=141, Percent_Identity=36.1702127659575, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17509631, Length=179, Percent_Identity=31.8435754189944, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321649, Length=371, Percent_Identity=39.3530997304582, Blast_Score=250, Evalue=3e-67,
Organism=Saccharomyces cerevisiae, GI6319499, Length=112, Percent_Identity=40.1785714285714, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6321773, Length=146, Percent_Identity=34.2465753424658, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640873, Length=110, Percent_Identity=38.1818181818182, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24640877, Length=110, Percent_Identity=38.1818181818182, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24640875, Length=110, Percent_Identity=38.1818181818182, Blast_Score=76, Evalue=4e-14,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 44509; Mature: 44377

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVQVGIVGKPNVGKSTFFAAATLSPVETADYPFTTVDPNQGVAHVRTECPCKAFGVECQ
CCEEEEECCCCCCCCHHEEEEEECCCCCCCCCCCEECCCCCCCCHHHCCCCHHHCCCEEC
PRNSSCIDGNRFVPVELIDVAGLVPGAHEGRGLGNKFLDDLRQASVLIHVVDVSGSTDEE
CCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCC
GRPCDPGTREPAEDVRFLERELDEWIAGILRRDWDRTAKRASLEKIPAAEVLRERLAGIG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
VSASDVESAMERAEVPSDLTKWSDEDIRRFAREVRRVNKPMVIAANKIDVECAEENLKRL
CCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
EEEVEYPVVPTCAEAELALRRAADQGLIRYLPGDSDFEILQEEKLSDEQLQALEFIREKV
HHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
LKRWGSTGVQEALNRAVFDVAKMIVVYPVENENKLSDSEGRVLPDALLLPEGTMVRELAY
HHHHCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHH
NIHTEIGESFNRAILVKPDGSREVVGEDHELEHGDVVKIQTS
HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
GVQVGIVGKPNVGKSTFFAAATLSPVETADYPFTTVDPNQGVAHVRTECPCKAFGVECQ
CEEEEECCCCCCCCHHEEEEEECCCCCCCCCCCEECCCCCCCCHHHCCCCHHHCCCEEC
PRNSSCIDGNRFVPVELIDVAGLVPGAHEGRGLGNKFLDDLRQASVLIHVVDVSGSTDEE
CCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCC
GRPCDPGTREPAEDVRFLERELDEWIAGILRRDWDRTAKRASLEKIPAAEVLRERLAGIG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
VSASDVESAMERAEVPSDLTKWSDEDIRRFAREVRRVNKPMVIAANKIDVECAEENLKRL
CCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
EEEVEYPVVPTCAEAELALRRAADQGLIRYLPGDSDFEILQEEKLSDEQLQALEFIREKV
HHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
LKRWGSTGVQEALNRAVFDVAKMIVVYPVENENKLSDSEGRVLPDALLLPEGTMVRELAY
HHHHCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHH
NIHTEIGESFNRAILVKPDGSREVVGEDHELEHGDVVKIQTS
HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]